circRNA basic information
circBase ID: hsa_circ_0003596
Name: hsa_circ_COL5A1
Synonym: -
Host Gene: COL5A1
Genomic location(hg19): chr9:137716445-137717750:+
Genomic location(hg38): chr9:134824599-134825904:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
 0005005
MONDO name: clear cell renal carcinoma
Disease details: clear cell renal cell carcinoma
Disease DO ID:
 4467
Disease MeSH ID:
 -
Disease NCIt ID:
 C4033
Disease ICD11 ID:
 -
Disease OMIM ID:
 -
Species: Human
Species details: Homo sapiens
Tissue specimen:

-
Cell lines:

786-O; Caki-1; 293T
In vivo animal model:

-
circRNA-disease information
Expression pattern:
UN
Associated gene: -
Associated microRNA: -
Biological function: unknown
Molecular mechanism: not specified
Biological pathway or process:

not specified
Detected method:
Q
M
Validation methods:

Microarray; Bioinformatics Analysis; RT-qPCR
Clinical significance:

-
Description:

hsa_circ_0003596 shows differential expression between ccRCC tumor cell lines and 293T cells and is part of the circRNA set screened by microarray/bioinformatics. The paper does not report a specific downstream miRNA/mRNA axis or functional role for this circRNA.
Confidence score:

0.2465
Other information
Title:

Construction of circRNA-based ceRNA network to reveal the role of circRNAs in the progression and prognosis of metastatic clear cell renal cell carcinoma.

Journal: Aging
Published: 2020
PubMed ID: 33223511
Study type:

combined biological and clinical study
Data availability: GSE100186; GSE137836; TCGA-KIRC
Code availability: -