circRNA basic information
circBase ID: hsa_circ_0000673
Name: hsa_circ_RSL1D1
Synonym: -
Host Gene: RSL1D1
Genomic location(hg19): chr16:11940357-11940700:-
Genomic location(hg38): chr16:11846500-11846843:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0019087
MONDO name: cholangiocarcinoma
Disease details: distal cholangiocarcinoma
Disease DO ID:
4947
Disease MeSH ID:
D018281
Disease NCIt ID:
C4436
Disease ICD11 ID:
2110597275
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

dCCA tumor tissue; adjacent normal tissue

Cell lines:

RBE; KMBC; TFK-1; HuH28; HEK 293T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: CCNB1
Associated microRNA: miR-548b-3p
Biological function: Oncogenic role in dCCA/CCA: promotes proliferation, migration, and invasion; associated with malignant clinicopathological features.
Molecular mechanism: ceRNA mechanism: validated binding to miR-548b-3p; proposed downstream target CCNB1 and possible promotion of dCCA progression via miR-548b-3p/CCNB1.
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); ceRNA regulation (promotes); cell cycle (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RNase R Treatment; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Luciferase Reporter Assay; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis; Transfection; CCK8; Transwell Assay; Wound Healing Assay; Colony Formation Assay

Clinical significance:

Diagnostic biomarker with AUC=0.85; high expression associated with tumor invasion, poor differentiation, and residual tumor.

Description:

hsa_circ_0000673 is up-regulated in distal cholangiocarcinoma and shows diagnostic potential (AUC 0.85). Functionally, its knockdown inhibits CCA cell proliferation, migration, and invasion, supporting an oncogenic role. Mechanistically, it binds miR-548b-3p and is proposed to affect CCNB1 within a ceRNA network.

Confidence score:

0.8162

Other information
Title:

Comprehensive circular RNA expression profiling constructs a ceRNA network and identifies hsa_circ_0000673 as a novel oncogene in distal cholangiocarcinoma.

Journal: Aging
Published: 2020
PubMed ID: 33221765
Study type:

combined biological and clinical study

Data availability: GSE148561
Code availability: -