circRNA basic information
circBase ID: hsa_circ_0001727
Name: hsa_circ_ZKSCAN1
Synonym: -
Host Gene: ZKSCAN1
Genomic location(hg19): chr7:99621041-99621930:+
Genomic location(hg38): chr7:100023418-100024307:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissue; para-cancerous tissues; liver tissues

Cell lines:

SMMC7721; HCC-LM3; Huh-7; QSG7701

In vivo animal model:

patient-derived xenograft / cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: FMRP, CCAR1, QKI5, beta-catenin
Associated microRNA: -
Biological function: Suppresses cancer stemness and malignant behaviors (proliferation, tumorigenicity), and inhibits HCC growth in vivo.
Molecular mechanism: Acts as an RBP sponge by competitively binding FMRP, thereby blocking FMRP binding to CCAR1 mRNA and deactivating Wnt/beta-catenin signaling; reduced circZKSCAN1 is attributed to downregulated QKI5.
Biological pathway or process:

Wnt/beta-catenin (inhibits); stemness (inhibits); proliferation (inhibits); metastasis (inhibits); ceRNA regulation (other)

Detected method:
Q
H
S
Validation methods:

RNA-seq; RT-qPCR; ISH (In Situ Hybridization); FISH / smFISH; Nuclear-Cytoplasmic Fractionation; RNase R Treatment; Actinomycin D / DRB Stability Assay; Sanger Sequencing; RIP (RNA Immunoprecipitation); circRIP; Luciferase Reporter Assay; RNA Pull-Down; IF (Immunofluorescence); Transfection; Colony Formation Assay; Flow Cytometry(Non-apoptosis/cycle); In Vivo Animal Model; IHC (Immunohistochemistry); Western Blot; H&E Staining; Survival Analysis; Bioinformatics Analysis; CCK8

Clinical significance:

Low circZKSCAN1 expression correlates with worse overall and recurrence-free survival; high circZKSCAN1 is a favorable prognostic factor and an independent factor for OS and relapse-free survival.

Description:

circZKSCAN1 is down-regulated in HCC and acts as a tumor suppressor by inhibiting cancer stemness and other malignant phenotypes. Mechanistically it functions as an RBP sponge, competitively binding FMRP to prevent FMRP-CCAR1 mRNA association, thereby reducing CCAR1-driven Wnt/beta-catenin transcriptional activity; its reduction is linked to decreased QKI5.

Confidence score:

0.8826

Other information
Title:

Circular RNAs negatively regulate cancer stem cells by physically binding FMRP against CCAR1 complex in hepatocellular carcinoma.

Journal: Theranostics
Published: 2019
PubMed ID: 31281495
Study type:

combined biological and clinical study

Data availability: GSE110048
Code availability: -