circRNA basic information
circBase ID: hsa_circ_0006117
Name: hsa_circ_PTPRA
Synonym: hsa_circRNA_102984
Host Gene: PTPRA
Genomic location(hg19): chr20:2944917-2945848:+
Genomic location(hg38): chr20:2964271-2965202:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005233
MONDO name: non-small cell lung carcinoma
Disease details: non-small cell lung carcinomas
Disease DO ID:
3908
Disease MeSH ID:
D002289
Disease NCIt ID:
C2926
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

NSCLC tumors; healthy lung tissue

Cell lines:

H23; H1755; H522; BEAS-2B

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: RASSF8, E-cadherin, AGO2
Associated microRNA: miR-96-5p
Biological function: Suppresses EMT, migration/invasion and metastasis in NSCLC.
Molecular mechanism: Acts as a miRNA sponge for miR-96-5p, thereby upregulating RASSF8 and supporting E-cadherin expression.
Biological pathway or process:

EMT (inhibits); migration (inhibits); invasion (inhibits); metastasis (inhibits); ceRNA regulation (promotes)

Detected method:
Q
B
M
Validation methods:

Microarray; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; Northern Blot; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Survival Analysis; Transfection; Wound Healing Assay; Transwell Assay; Western Blot; IF (Immunofluorescence); RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; RNA Pull-Down; In Vivo Animal Model; H&E Staining; IHC (Immunohistochemistry); Bioinformatics Analysis

Clinical significance:

Downregulation of circPTPRA was associated with metastatic disease and shorter survival in NSCLC patients.

Description:

circPTPRA is down-regulated in NSCLC tumors and acts as a tumor-suppressive circRNA. It mainly localizes in the cytoplasm and inhibits EMT, migration/invasion, and metastasis by sponging miR-96-5p, which relieves repression of RASSF8 and supports E-cadherin expression. Low circPTPRA level associates with metastasis and poorer patient survival.

Confidence score:

0.894

Other information
Title:

The circRNA circPTPRA suppresses epithelial-mesenchymal transitioning and metastasis of NSCLC cells by sponging miR-96-5p.

Journal: EBioMedicine
Published: 2019
PubMed ID: 31160270
Study type:

combined biological and clinical study

Data availability: Supplementary File 1; https://doi.org/10.1016/j.ebiom.2019.05.032
Code availability: -