circRNA basic information
circBase ID: hsa_circ_0003645
Name: -
Synonym: circ_0003645
Host Gene: -
Genomic location(hg19): chr16:19656207-19663412:+
Genomic location(hg38): chr16:19644885-19652090:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007254
MONDO name: breast cancer
Disease details: breast cancer
Disease DO ID:
1612
Disease MeSH ID:
-
Disease NCIt ID:
C9335
Disease ICD11 ID:
1047754165
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

breast tumor tissues; adjacent breast tissues

Cell lines:

T47D; MCF-7; BT549; MDA-MB-231; Hs-578T; MCF-10A; MCF-12A; 293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: HMGB1, Ago2
Associated microRNA: miR-139-3p
Biological function: promotes proliferation; inhibits apoptosis; promotes tumor growth in vivo
Molecular mechanism: ceRNA/miRNA sponge mechanism: circ_0003645 sponges miR-139-3p to positively regulate HMGB1 expression
Biological pathway or process:

ceRNA regulation (promotes); proliferation (promotes); apoptosis (inhibits)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Nuclear-Cytoplasmic Fractionation; Transfection; Luciferase Reporter Assay; RNA Pull-Down; RIP (RNA Immunoprecipitation); CCK8; Colony Formation Assay; Annexin V/PI Flow Cytometry; Western Blot; In Vivo Animal Model

Clinical significance:

negatively correlated with prognosis

Description:

circ_0003645 is up-regulated in breast cancer tissues and cell lines and acts oncogenically by promoting proliferation and suppressing apoptosis. Mechanistically, it functions as a ceRNA that sponges miR-139-3p to increase HMGB1 expression, supporting tumor growth in vitro and in a cell line-derived xenograft model.

Confidence score:

0.7256

Other information
Title:

Hsa_circ_0003645 Promotes Breast Cancer Progression by Regulating miR-139-3p/HMGB1 Axis.

Journal: OncoTargets and therapy
Published: 2020
PubMed ID: 33116616
Study type:

combined biological and clinical study

Data availability: GSE101123; TCGA
Code availability: -