circRNA basic information
circBase ID: hsa_circ_0031288
Name: hsa_circ_PABPN1
Synonym: circRNA poly(A) binding protein nuclear 1
Host Gene: PABPN1
Genomic location(hg19): chr14:23793346-23793498:+
Genomic location(hg38): chr14:23324137-23324289:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues; adjacent non-tumor colon tissues; xenograft tumors

Cell lines:

HCT-116; SW480; NCM460

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: SRSF1
Associated microRNA: miR-638
Biological function: Circ-PABPN1 acts as a tumor-promoting functional effector in CRC: it supports cell viability, colony formation, invasion, migration and tumor growth, suppresses apoptosis, and its down-regulation contributes to propofol-mediated anti-CRC effects.
Molecular mechanism: Propofol down-regulates circ-PABPN1; reduced circ-PABPN1 increases miR-638, which decreases SRSF1 expression, thereby repressing CRC growth and metastasis.
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); invasion (promotes); migration (promotes); metastasis (promotes); ceRNA regulation (other)

Detected method:
Q
Validation methods:

RNase R Treatment; RT-qPCR; Clinical Sample Validation; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Annexin V/PI Flow Cytometry; Transwell Assay; Wound Healing Assay; In Vivo Animal Model; Western Blot; Bioinformatics Analysis

Clinical significance:

Circ-PABPN1 was overexpressed in CRC clinical tumor tissues compared with matched normal tissues, suggesting involvement in CRC development; no diagnostic or prognostic performance was reported.

Description:

Circ-PABPN1 is up-regulated in CRC tissues and cells and functions as a pro-tumor circRNA. Propofol suppresses CRC development partly by down-regulating circ-PABPN1, which releases miR-638 activity and reduces SRSF1 expression, leading to decreased growth, invasion, migration, metastasis and increased apoptosis.

Confidence score:

0.7183

Other information
Title:

Propofol suppresses colorectal cancer development by the circ-PABPN1/miR-638/SRSF1 axis.

Journal: Analytical biochemistry
Published: 2021
PubMed ID: 34453920
Study type:

combined biological and clinical study

Data availability: GSE126094; https://doi.org/10.1016/j.ab.2021.114354
Code availability: -