circRNA basic information
circBase ID: hsa_circ_0106800
Name: hsa_circ_PGAP3
Synonym: circ-PGAP3
Host Gene: PGAP3
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005494
MONDO name: triple-negative breast carcinoma
Disease details: triple negative breast cancer
Disease DO ID:
0060081
Disease MeSH ID:
D064726
Disease NCIt ID:
C71732
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

TNBC tissues; normal tissues; xenograft tumor tissues

Cell lines:

MDA-MB-231; HS598T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: Myc, Ago2, PGAP3
Associated microRNA: miR-330-3p
Biological function: promotes TNBC cell proliferation, invasion and metastasis; promotes tumor growth in vivo
Molecular mechanism: acts as a miRNA sponge to inhibit miR-330-3p, leading to upregulation of Myc
Biological pathway or process:

proliferation (promotes); invasion (promotes); metastasis (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Transwell Assay; In Vivo Animal Model; IHC (Immunohistochemistry); Western Blot; H&E Staining; Survival Analysis; Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

High circ-PGAP3 was closely associated with large tumor size, lymph node metastasis, later TNM stage and dismal outcome.

Description:

circ-PGAP3 is up-regulated in TNBC tissues and promotes TNBC cell proliferation, invasion and metastasis in vitro and in vivo. It mainly localizes to the cytoplasm and functions as a ceRNA by sponging miR-330-3p, thereby increasing Myc expression. High circ-PGAP3 correlates with aggressive clinicopathological features and worse patient survival.

Confidence score:

0.8556

Other information
Title:

The Novel Circular RNA Circ-PGAP3 Promotes the Proliferation and Invasion of Triple Negative Breast Cancer by Regulating the miR-330-3p/Myc Axis.

Journal: OncoTargets and therapy
Published: 2020
PubMed ID: 33116597
Study type:

combined biological and clinical study

Data availability: -
Code availability: -