circRNA basic information
circBase ID: hsa_circ_0000324
Name: hsa_circ_NEAT1
Synonym: circNEAT1
Host Gene: NEAT1
Genomic location(hg19): chr11:65211304-65211570:+
Genomic location(hg38): chr11:65443833-65444099:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0008315
MONDO name: prostate cancer
Disease details: prostate cancer
Disease DO ID:
10283
Disease MeSH ID:
D011471
Disease NCIt ID:
C7378
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

malignant tissue samples; adjacent normal tissue samples

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: -
Biological function: Diagnostic tissue biomarker; excluded from Cox regression analyses for BCR due to very low expression and limited assay performance.
Molecular mechanism: not specified
Biological pathway or process:

not specified

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; RNase R Treatment; Sanger Sequencing; Clinical Sample Validation; ROC Analysis; Cohort Study

Clinical significance:

Upregulated in tumor vs adjacent normal tissue; modest discrimination (AUC 0.634) with limited detectability (only 45/79 pairs).

Description:

circNEAT1 is up-regulated in prostate cancer tissue but has very low abundance and poorer RT-qPCR performance, leading to exclusion from multivariable BCR prognostic modeling in this study. Its role here is primarily as a diagnostic expression marker rather than a mechanistically characterized regulator.

Confidence score:

0.6663

Other information
Title:

Circular RNAs and Their Linear Transcripts as Diagnostic and Prognostic Tissue Biomarkers in Prostate Cancer after Prostatectomy in Combination with Clinicopathological Factors.

Journal: International journal of molecular sciences
Published: 2020
PubMed ID: 33105568
Study type:

combined biological and clinical study

Data availability: Supplementary Microarray Data File.xlsx
Code availability: -