circRNA basic information
circBase ID: -
Name: hsa_circ_HIPK3
Synonym: circHIPK3
Host Gene: HIPK3
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0800504
MONDO name: idiopathic pulmonary fibrosis
Disease details: idiopathic pulmonary fibrosis
Disease DO ID:
-
Disease MeSH ID:
D054990
Disease NCIt ID:
C35716
Disease ICD11 ID:
1074069640
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

-

Cell lines:

A549; H1299; HEK 293T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: -
Biological function: Potential biomarker for IPF-related diseases; detected and bioimaged in living pulmonary fibrosis cells under TGF-beta1 treatment.
Molecular mechanism: The study used a sequence-specific back-splice junction of circHIPK3 to activate a catalytic hairpin assembly reaction on a DNA octahedral amplifier, generating FRET signals for endogenous circHIPK3 detection; no disease-driving molecular mechanism was experimentally defined.
Biological pathway or process:

fibrosis (other); other pathway/process (other)

Detected method:
Q
Validation methods:

RT-qPCR; Transfection

Clinical significance:

circHIPK3 is proposed as a potential biomarker for specific IPF-related diseases and early diagnosis of IPF-related disease.

Description:

This study used circHIPK3 as an IPF-related target circRNA and developed a DOA nanoprobe for in situ FRET detection and live-cell bioimaging. circHIPK3 was significantly upregulated in TGF-beta1-treated A549 pulmonary fibrosis cell models, supporting its potential as a biomarker for IPF-related diseases.

Confidence score:

0.2586

Other information
Title:

A DNA octahedral amplifier for endogenous circRNA detection and bioimaging in living cells and its biomarker study.

Journal: The Analyst
Published: 2024
PubMed ID: 38116839
Study type:

biological research

Data availability: -
Code availability: -