circRNA basic information
circBase ID: hsa_circ_0101802
Name: hsa_circ_PNN
Synonym: circ-PNN
Host Gene: PNN
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

serum exosomes

Cell lines:

SW620

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: hsa-miR-6833-3p, hsa-let-7i-3p, hsa-miR-1301-3p
Biological function: Potential non-invasive diagnostic biomarker for CRC (including early-stage CRC); may play a role in CRC pathogenesis.
Molecular mechanism: Predicted circRNA-miRNA-mRNA binding network; negative correlation with specific miRNAs (putative miRNA sponge/ceRNA role, not functionally validated).
Biological pathway or process:

ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; Actinomycin D / DRB Stability Assay; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Serum exosomal circ-PNN distinguishes CRC from healthy controls (AUC 0.855 training; 0.826 validation) and has diagnostic value for early-stage CRC (AUC 0.854).

Description:

Serum exosomal circ-PNN (hsa_circ_0101802) is up-regulated in CRC patients and shows good diagnostic performance (including early-stage CRC) by ROC analysis. The study builds a predicted circ-PNN-miRNA-mRNA network and reports negative correlations between circ-PNN and hsa-miR-6833-3p, hsa-let-7i-3p, and hsa-miR-1301-3p, suggesting a potential ceRNA-related role that requires further functional validation.

Confidence score:

0.6841

Other information
Title:

RNA-Seq Profiling of Serum Exosomal Circular RNAs Reveals Circ-PNN as a Potential Biomarker for Human Colorectal Cancer.

Journal: Frontiers in oncology
Published: 2020
PubMed ID: 32626660
Study type:

combined biological and clinical study

Data availability: GSE149200
Code availability: -