circRNA basic information
circBase ID: -
Name: hsa_circ_PSD3
Synonym: hsa_circ_104566
Host Gene: PSD3
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; adjacent nontumorous tissues; adjacent noncancer tissues; lung tissues; tumor tissues

Cell lines:

SK-HEP-1; HLE; SNU449; Hep-3B; Huh7; MIHA; HEK-293 T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: FOXP1
Associated microRNA: miR-338-3p
Biological function: Promotes HCC progression by increasing cell viability, proliferation, migration, and invasion, and decreasing apoptosis; promotes EMT-like changes (decreases E-cadherin and increases N-cadherin) and supports tumor growth and metastasis in vivo.
Molecular mechanism: Acts as a ceRNA by sponging miR-338-3p, thereby relieving miR-338-3p-mediated repression of FOXP1 and promoting malignant phenotypes in HCC.
Biological pathway or process:

apoptosis (inhibits); proliferation (promotes); migration (promotes); invasion (promotes); EMT (promotes); metastasis (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Annexin V/PI Flow Cytometry; Wound Healing Assay; Transwell Assay; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; H&E Staining; Clinical Sample Validation; Survival Analysis; Bioinformatics Analysis

Clinical significance:

High expression of hsa_circ_104566 in HCC tissues is significantly associated with poor prognosis/shorter survival and correlates with aggressive clinicopathological features (tumor size, TNM stage, lymph node involvement).

Description:

hsa_circ_104566 is up-regulated in HCC and its high expression is associated with shorter overall survival. Functionally, it promotes proliferation, migration, invasion and EMT-like changes and inhibits apoptosis by acting as a ceRNA that sponges miR-338-3p to increase FOXP1, and its knockdown suppresses tumor growth and metastasis in xenograft models.

Confidence score:

0.8156

Other information
Title:

circRNA hsa_circ_104566 Sponged miR-338-3p to Promote Hepatocellular Carcinoma Progression.

Journal: Cell transplantation
Published: 2020
PubMed ID: 33028110
Study type:

combined biological and clinical study

Data availability: All data generated or analyzed during this study are included in this published article.
Code availability: -