circRNA basic information
circBase ID: hsa_circ_0000615
Name: hsa_circ_ZNF609
Synonym: cir-ZNF609 / circular RNA ZNF609 / circRNA ZNF609
Host Gene: ZNF609
Genomic location(hg19): chr15:64791491-64792365:+
Genomic location(hg38): chr15:64499292-64500166:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0018309
MONDO name: Hirschsprung disease
Disease details: Hirschsprung disease
Disease DO ID:
10487
Disease MeSH ID:
D006627
Disease NCIt ID:
C34700
Disease ICD11 ID:
1772690306
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

colon tissues / bowel tissues / intestine tissue

Cell lines:

293T; SH-SY5Y

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: AKT3, Ago2
Associated microRNA: miR-150-5p
Biological function: Promotes cell proliferation and migration; knockdown inhibits proliferation and migration in vitro
Molecular mechanism: Acts as a ceRNA/miRNA sponge for miR-150-5p to modulate AKT3 expression
Biological pathway or process:

proliferation (promotes); migration (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Sanger Sequencing; Back-Splice Junction PCR / divergent primers PCR; Nuclear-Cytoplasmic Fractionation; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Transwell Assay; Western Blot; IHC (Immunohistochemistry); Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Potential diagnostic capability for HSCR (AUC 0.86; sensitivity 77%; specificity 94%)

Description:

cir-ZNF609 is down-regulated in HSCR colon/bowel tissues and its knockdown inhibits cell proliferation and migration in 293T and SH-SY5Y cells. Mechanistically, cir-ZNF609 mainly localizes to the cytoplasm and acts as a ceRNA by sponging miR-150-5p, thereby modulating AKT3 expression, suggesting diagnostic potential for HSCR.

Confidence score:

0.8703

Other information
Title:

Circular RNA ZNF609 functions as a competitive endogenous RNA to regulate AKT3 expression by sponging miR-150-5p in Hirschsprung's disease.

Journal: Oncotarget
Published: 2017
PubMed ID: 27903978
Study type:

combined biological and clinical study

Data availability: -
Code availability: -