circRNA basic information
circBase ID: hsa_circ_0003356
Name: hsa_circ_PPP5C
Synonym: Circ_0003356
Host Gene: PPP5C
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: unclear
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC/matched noncancerous tissues; gastric cancerous tissues; matched non-cancerous tissues; tumor tissue

Cell lines:

AGS; HGC-27; GES-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: FKBP5
Associated microRNA: miR-556-5p
Biological function: Suppresses gastric cancer progression; overexpression induces apoptosis and inhibits cell proliferation, tumor growth, migration and invasion.
Molecular mechanism: circ_0003356 functions as a miR-556-5p sponge to regulate FKBP5 expression through the circ_0003356/miR-556-5p/FKBP5 axis.
Biological pathway or process:

ceRNA regulation (other); proliferation (inhibits); apoptosis (promotes); migration (inhibits); invasion (inhibits); metastasis (inhibits)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Clinical Sample Validation; Cohort Study; Survival Analysis; RNase R Treatment; Actinomycin D / DRB Stability Assay; Transfection; CCK8; EdU Staining; Annexin V/PI Flow Cytometry; Transwell Assay; Nuclear-Cytoplasmic Fractionation; Bioinformatics Analysis; RNA Pull-Down; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry)

Clinical significance:

circ_0003356 is a potential prognostic biomarker of human gastric cancer; lower tumor circ_0003356 levels are associated with poorer overall survival, metastasis, histological tumor grade and clinical stage.

Description:

hsa_circ_0003356/circ_0003356 is down-regulated in gastric cancer tissues and cell lines and is associated with favorable prognosis when expressed at higher levels. Functionally, circ_0003356 suppresses GC progression by sponging miR-556-5p and increasing FKBP5, thereby inhibiting proliferation, migration, invasion and tumor growth while promoting apoptosis.

Confidence score:

0.8823

Other information
Title:

Hsa_circ_0003356 suppresses gastric cancer progression via miR-556-5p/FKBP5 axis.

Journal: Toxicology in vitro : an international journal published in association with BIBRA
Published: 2024
PubMed ID: 38401744
Study type:

combined biological and clinical study

Data availability: GSE184882; TCGA; Data will be made available on request
Code availability: -