circRNA basic information
circBase ID: hsa_circ_0005654
Name: hsa_circ_PRDM2
Synonym: circ0005654
Host Gene: PRDM2
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; adjacent tissues; lung tissues; xenografted mouse tumor tissues

Cell lines:

MKN-45; HGC-27; NCI-N87; MKN-74; GES-1; HEK293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: sp1, myc, beta-catenin
Associated microRNA: miR-363
Biological function: Promotes GC cell proliferation, migration, invasion, tumorigenesis and metastasis; inhibits apoptosis.
Molecular mechanism: Acts as a ceRNA by sponging miR-363 to enhance sp1 expression; sp1 transcriptionally activates myc and potentiates Wnt/beta-catenin signaling.
Biological pathway or process:

Wnt/beta-catenin (promotes); proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); apoptosis (inhibits); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; FISH / smFISH; Luciferase Reporter Assay; ChIP / ChIP-seq; Transfection; CCK8; Transwell Assay; In Vivo Animal Model; H&E Staining; Western Blot; Clinical Sample Validation; Survival Analysis; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Overexpression of circ0005654 was correlated with a poor long-term prognosis in patients with GC; ROC AUC=0.781 indicates diagnostic value.

Description:

circ0005654 is up-regulated in gastric cancer tissues and cell lines and is mainly localized in the cytoplasm. It promotes malignant phenotypes (proliferation, migration/invasion, tumor growth and metastasis) by sponging miR-363 to increase sp1, which activates myc transcription and potentiates Wnt/beta-catenin signaling. High circ0005654 is associated with poor prognosis and has diagnostic value in GC.

Confidence score:

0.7976

Other information
Title:

The circular RNA circ0005654 interacts with specificity protein 1 via microRNA-363 sequestration to promote gastric cancer progression.

Journal: Bioengineered
Published: 2021
PubMed ID: 34499009
Study type:

combined biological and clinical study

Data availability: -
Code availability: -