circRNA basic information
circBase ID: hsa_circ_0000944
Name: hsa_circ_CCDC9
Synonym: circCCDC9
Host Gene: CCDC9
Genomic location(hg19): chr19:47767859-47768203:+
Genomic location(hg38): chr19:47264602-47264946:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric cancer tissues; adjacent normal tissues; normal gastric epithelial tissues

Cell lines:

GES-1; AGS; BGC-823; HGC-27; MGC-803; MKN-28; MKN-45; SGC-7901; HEK-293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: CAV1, AGO2
Associated microRNA: miR-6792-3p
Biological function: tumor suppressor; inhibits proliferation; inhibits migration; inhibits invasion; inhibits tumor growth and metastasis
Molecular mechanism: Acts as a ceRNA/miRNA sponge for miR-6792-3p to relieve repression of CAV1.
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); metastasis (inhibits); ceRNA regulation (promotes); Wnt/beta-catenin (inhibits); cell cycle (inhibits); EMT (inhibits)

Detected method:
Q
H
S
Validation methods:

RNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; FISH / smFISH; ISH (In Situ Hybridization); RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Colony Formation Assay; Wound Healing Assay; Transwell Assay; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; H&E Staining; Clinical Sample Validation; Survival Analysis; Bioinformatics Analysis

Clinical significance:

Low circCCDC9 expression correlates with larger tumor size, lymph node invasion, advanced clinical stage, and shorter overall survival; high circCCDC9 predicts longer OS and DFS.

Description:

circCCDC9 (hsa_circ_0000944), derived from CCDC9, is down-regulated in gastric cancer and mainly localized in the cytoplasm. It suppresses GC cell proliferation, migration, invasion, tumor growth and liver metastasis by sponging miR-6792-3p and de-repressing CAV1, and higher circCCDC9 expression is associated with better OS/DFS.

Confidence score:

0.8892

Other information
Title:

Circular RNA circCCDC9 acts as a miR-6792-3p sponge to suppress the progression of gastric cancer through regulating CAV1 expression.

Journal: Molecular cancer
Published: 2020
PubMed ID: 32386516
Study type:

combined biological and clinical study

Data availability: -
Code availability: -