circRNA basic information
circBase ID: -
Name: hsa_circ_NUP98
Synonym: circNUP98
Host Gene: NUP98
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005086
MONDO name: renal cell carcinoma
Disease details: renal cell carcinoma
Disease DO ID:
4450
Disease MeSH ID:
D002292
Disease NCIt ID:
-
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

RCC tissues; adjacent normal tissues

Cell lines:

293K; ACHN; 786-O; Caki-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: PRDX3, STAT3, Ago2
Associated microRNA: miR-567
Biological function: Acts as an oncogene, promoting proliferation, migration and invasion, inhibiting apoptosis, enhancing chemosensitivity when silenced, and promoting RCC tumor growth in vivo.
Molecular mechanism: STAT3 induces circNUP98; circNUP98 functions as a miRNA sponge for miR-567 to upregulate PRDX3 via a ceRNA mechanism involving Ago2-RISC.
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); migration (promotes); invasion (promotes); EMT (promotes); chemoresistance (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Clinical Sample Validation; Survival Analysis; Transfection; CCK8; Colony Formation Assay; Annexin V/PI Flow Cytometry; Transwell Assay; Wound Healing Assay; Western Blot; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); ChIP / ChIP-seq; Nuclear-Cytoplasmic Fractionation; In Vivo Animal Model; Bioinformatics Analysis

Clinical significance:

High expression of circNUP98 correlates with advanced tumour stage and poorer overall and disease-free survival in RCC patients; potential prognostic biomarker.

Description:

circNUP98 is up-regulated in renal cell carcinoma and is associated with advanced stage and poor survival. It promotes RCC malignant phenotypes by sponging miR-567 to increase PRDX3, and its expression is induced by STAT3; silencing circNUP98 suppresses tumor growth and increases chemosensitivity.

Confidence score:

0.8037

Other information
Title:

A novel circRNA, circNUP98, a potential biomarker, acted as an oncogene via the miR-567/ PRDX3 axis in renal cell carcinoma.

Journal: Journal of cellular and molecular medicine
Published: 2020
PubMed ID: 32729669
Study type:

combined biological and clinical study

Data availability: Data are available upon reasonable request.
Code availability: -