circRNA basic information
circBase ID: -
Name: hsa_circ_PICALM
Synonym: hsa _circRNA_100918
Host Gene: PICALM
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005148
MONDO name: type 2 diabetes mellitus
Disease details: type 2 diabetes mellitus
Disease DO ID:
9352
Disease MeSH ID:
D003924
Disease NCIt ID:
C26747
Disease ICD11 ID:
119724091
Disease OMIM ID:
125853
Species: Human
Species details: Homo sapiens
Tissue specimen:

whole blood

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: PICALM, mRNAs
Associated microRNA: hsa-miR-33b-5p, hsa-miR-33a-5p, hsa-miR-148a-5p, hsa-miR-502-5p, hsa-miR-891b
Biological function: May be related to depression occurrence in T2DM, possibly via autophagy-related mechanisms (inferred through PICALM).
Molecular mechanism: May function as a miRNA sponge; associated with target gene PICALM and predicted pathways.
Biological pathway or process:

ceRNA regulation (other); MAPK (other); thyroid hormone (other); Wnt/beta-catenin (other); EGFR (other); autophagy (other)

Detected method:
Q
M
Validation methods:

Microarray; RNase R Treatment; RT-qPCR; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

-

Description:

hsa-circRNA_100918 (linked to host/target gene PICALM) is up-regulated in whole blood of T2DM patients with depression and validated by RT-qPCR. The paper proposes it may act as a miRNA sponge in a predicted circRNA/miRNA/mRNA network and suggests relevance to autophagy-related mechanisms via PICALM, with KEGG implicating thyroid hormone, Wnt, ErbB and MAPK signaling.

Confidence score:

0.5135

Other information
Title:

Relationships of circular RNA with diabetes and depression.

Journal: Scientific reports
Published: 2017
PubMed ID: 28779132
Study type:

combined biological and clinical study

Data availability: The data in this article is available.
Code availability: -