circRNA basic information
circBase ID: hsa_circ_0016788
Name: -
Synonym: -
Host Gene: -
Genomic location(hg19): chr1:228581376-228594517:-
Genomic location(hg38): chr1:228393675-228406816:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissues; adjacent tissues

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: cyclin-dependent kinase 4 expression (CDK4), pyruvate kinase isozymes M2, Wnt/beta signaling pathway
Associated microRNA: miR-486
Biological function: Associated with tumor progression and poorer overall survival in HCC; suggested to promote proliferation and invasion and inhibit apoptosis.
Molecular mechanism: Suggested ceRNA-like mechanism via sponging miR-486 to regulate CDK4; suggested involvement in glycolysis via pyruvate kinase isozymes M2; suggested activation of Wnt/beta signaling.
Biological pathway or process:

proliferation (promotes); invasion (promotes); apoptosis (inhibits); glycolysis (promotes); Wnt/beta-catenin (promotes); stemness (promotes); chemoresistance (other); metastasis (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Clinical Sample Validation; Cohort Study; Survival Analysis; ROC Analysis

Clinical significance:

Elevated in tumor vs adjacent tissue and shows excellent diagnostic value (AUC 0.913); high expression correlates with shorter OS and is an independent predictor for poorer OS.

Description:

Circ_0016788 is up-regulated in resected HCC tumor tissues and can discriminate tumor from adjacent tissue. High tumor circ_0016788 expression is associated with more aggressive clinicopathological features and independently predicts shorter overall survival. The paper discusses potential mechanisms including miR-486/CDK4 regulation, enhanced glycolysis, and Wnt/beta-catenin pathway activation.

Confidence score:

0.5918

Other information
Title:

Circular RNA 0016788 displays as a biomarker for tumor progression and poor prognosis in surgical hepatocellular carcinoma patients.

Journal: Journal of clinical laboratory analysis
Published: 2020
PubMed ID: 32319701
Study type:

clinical study

Data availability: -
Code availability: -