circRNA basic information
circBase ID: hsa_circ_0001522
Name: hsa_circ_CSNK1G3
Synonym: circCSNK1G3
Host Gene: CSNK1G3
Genomic location(hg19): chr5:122881110-122893258:+
Genomic location(hg38): chr5:123545416-123557564:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
 0008315
MONDO name: prostate cancer
Disease details: prostate cancer
Disease DO ID:
 10283
Disease MeSH ID:
 D011471
Disease NCIt ID:
 C7378
Disease ICD11 ID:
 -
Disease OMIM ID:
 -
Species: Human
Species details: Homo sapiens
Tissue specimen:

malignant tissue samples; adjacent normal tissue samples
Cell lines:

-
In vivo animal model:

-
circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: -
Biological function: Diagnostic tissue biomarker for discrimination between malignant and adjacent normal prostate tissue; not a relevant BCR predictor in this cohort.
Molecular mechanism: not specified
Biological pathway or process:

not specified
Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; RNase R Treatment; Sanger Sequencing; Clinical Sample Validation; ROC Analysis; Cohort Study; Survival Analysis
Clinical significance:

Discriminates malignant vs adjacent normal prostate tissue (AUC 0.780).
Description:

circCSNK1G3 is down-regulated in prostate cancer tissue and was assessed mainly for diagnostic discrimination and BCR association analyses; this study did not perform functional mechanism experiments for it.
Confidence score:

0.6813
Other information
Title:

Circular RNAs and Their Linear Transcripts as Diagnostic and Prognostic Tissue Biomarkers in Prostate Cancer after Prostatectomy in Combination with Clinicopathological Factors.

Journal: International journal of molecular sciences
Published: 2020
PubMed ID: 33105568
Study type:

combined biological and clinical study
Data availability: Supplementary Microarray Data File.xlsx
Code availability: -