circRNA basic information
circBase ID: hsa_circ_0001944
Name: hsa_circ_FIRRE
Synonym: circBCBM1
Host Gene: FIRRE
Genomic location(hg19): chrX:130883333-130928494:-
Genomic location(hg38): chrX:131749305-131794466:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007254
MONDO name: breast cancer
Disease details: breast cancer brain metastasis
Disease DO ID:
1612
Disease MeSH ID:
-
Disease NCIt ID:
C9335
Disease ICD11 ID:
1047754165
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

breast cancer tissues; breast cancer brain metastasis tissues; adjacent normal breast tissues; plasma; primary tumor tissues; mouse brains; brain slices

Cell lines:

231-BR; MDA-MB-231; BT-474; T47D; HEK293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: BRD4, MMP9, Ago2, Shh, Gli1
Associated microRNA: miR-125a
Biological function: Promotes proliferation and migration in vitro; facilitates tumor growth and brain metastasis in vivo; induces apoptosis when silenced.
Molecular mechanism: Acts as a miR-125a sponge, upregulates BRD4, leading to increased MMP9 via SHH signaling.
Biological pathway or process:

proliferation (promotes); migration (promotes); apoptosis (inhibits); metastasis (promotes); Hedgehog (promotes); ceRNA regulation (promotes)

Detected method:
Q
H
S
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Actinomycin D / DRB Stability Assay; RT-qPCR; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Survival Analysis; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Annexin V/PI Flow Cytometry; Transwell Assay; Wound Healing Assay; In Vivo Animal Model; H&E Staining; Western Blot; Bioinformatics Analysis; RNA-seq

Clinical significance:

Upregulated in BCBM tissues and plasma; higher expression in primary tumor associated with shorter BMFS; potential diagnostic and prognostic biomarker.

Description:

circBCBM1 (hsa_circ_0001944), derived from the FIRRE locus, is upregulated in breast cancer brain metastasis cells, tissues, and patient plasma. It promotes proliferation, migration, tumor growth and brain metastasis by sponging miR-125a to upregulate BRD4, which increases MMP9 via SHH signaling. High circBCBM1 in primary tumors predicts shorter brain metastasis-free survival, supporting diagnostic/prognostic potential.

Confidence score:

0.8817

Other information
Title:

Circular RNA circBCBM1 promotes breast cancer brain metastasis by modulating miR-125a/BRD4 axis.

Journal: International journal of biological sciences
Published: 2021
PubMed ID: 34421353
Study type:

combined biological and clinical study

Data availability: -
Code availability: -