circRNA basic information
circBase ID: hsa_circ_0029340
Name: hsa_circ_SCARB1
Synonym: -
Host Gene: SCARB1
Genomic location(hg19): chr12:125292306-125294835:-
Genomic location(hg38): chr12:124807760-124810289:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
 0005086
MONDO name: renal cell carcinoma
Disease details: renal cell carcinoma
Disease DO ID:
 4450
Disease MeSH ID:
 D002292
Disease NCIt ID:
 -
Disease ICD11 ID:
 -
Disease OMIM ID:
 -
Species: Human
Species details: Homo sapiens
Tissue specimen:

RCC tissues; adjacent normal renal tissues
Cell lines:

-
In vivo animal model:

-
circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: -
Biological function: -
Molecular mechanism: ceRNA network involvement (bioinformatics prediction)
Biological pathway or process:

ceRNA regulation (other)
Detected method:
S
M
Validation methods:

Microarray; RNA-seq; Bioinformatics Analysis
Clinical significance:

-
Description:

hsa_circ_0029340 (host gene SCARB1) was identified as an up-regulated differentially expressed circRNA in RCC and included in a predicted circRNA-miRNA-mRNA ceRNA network derived from GEO and TCGA datasets, without experimental validation.
Confidence score:

0.2465
Other information
Title:

Integrated analysis of a competing endogenous RNA network in renal cell carcinoma using bioinformatics tools.

Journal: Bioscience reports
Published: 2019
PubMed ID: 31213578
Study type:

bioinformatics study
Data availability: GSE100186; TCGA
Code availability: -