circRNA basic information
circBase ID: hsa_circ_0005571
Name: hsa_circ_IFI30
Synonym: circIFI30
Host Gene: IFI30
Genomic location(hg19): chr19:18285849-18286507:+
Genomic location(hg38): chr19:18175039-18175697:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005494
MONDO name: triple-negative breast carcinoma
Disease details: triple-negative breast cancer
Disease DO ID:
0060081
Disease MeSH ID:
D064726
Disease NCIt ID:
C71732
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

TNBC tissues; adjacent non-cancerous tissues; tissue microarrays (TMAs)

Cell lines:

MDA-MB-231; MDA-MB-468; BT-549; MCF-10A; 293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: CD44, AGO2
Associated microRNA: miR-520b-3p
Biological function: Promotes TNBC cell proliferation, migration, invasion, cell cycle progression, tumorigenesis and metastasis; inhibits apoptosis when upregulated.
Molecular mechanism: Acts as a ceRNA/miRNA sponge for miR-520b-3p to upregulate CD44, promoting EMT and TNBC progression; associated with AGO2-containing RISC.
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); cell cycle (promotes); apoptosis (inhibits); EMT (promotes); ceRNA regulation (promotes); angiogenesis (promotes)

Detected method:
Q
H
S
Validation methods:

RNA-seq; RT-qPCR; ISH (In Situ Hybridization); Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; Transfection; CCK8; EdU Staining; Colony Formation Assay; Wound Healing Assay; Transwell Assay; Annexin V/PI Flow Cytometry; Cell Cycle Assay; TUNEL; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; H&E Staining; Survival Analysis; ROC Analysis; Bioinformatics Analysis; Cohort Study; Clinical Sample Validation

Clinical significance:

High circIFI30 expression correlates with higher histological grade/clinical stage and poor prognosis; shows diagnostic value distinguishing TNBC from noncancerous tissues.

Description:

circIFI30 (hsa_circ_0005571), derived from the IFI30 gene, is upregulated in TNBC and mainly localized in the cytoplasm. It promotes TNBC proliferation, migration/invasion, EMT, tumor growth and lung metastasis by sponging miR-520b-3p to upregulate CD44. High circIFI30 is associated with advanced clinicopathological features and poorer overall survival.

Confidence score:

0.8969

Other information
Title:

The circRNA circIFI30 promotes progression of triple-negative breast cancer and correlates with prognosis.

Journal: Aging
Published: 2020
PubMed ID: 32497020
Study type:

combined biological and clinical study

Data availability: -
Code availability: -