circRNA basic information
circBase ID: hsa_circ_0072309
Name: hsa_circ_LIFR
Synonym: chr5:38523418-38530666-
Host Gene: LIFR
Genomic location(hg19): chr5:38523520-38530768:-
Genomic location(hg38): chr5:38523418-38530666:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005075
MONDO name: thyroid gland papillary carcinoma
Disease details: papillary thyroid carcinoma
Disease DO ID:
3969
Disease MeSH ID:
-
Disease NCIt ID:
C4035
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumour tissues; normal tissues; thyroid tissues

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: Hippo-YAP pathway, RSU1, STAG2
Associated microRNA: hsa-miR-1277, hsa-miR-331-5p, hsa-miR-409-3p, hsa-miR-515-5p, hsa-miR-1276
Biological function: Lower expression is associated with advanced pT stage and lymph node metastasis (pN stage); potential progression biomarker.
Molecular mechanism: Predicted to act as a miRNA sponge (ceRNA-like).
Biological pathway or process:

metastasis (inhibits); invasion (inhibits); EMT (inhibits); ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RNase R Treatment; RT-qPCR; divergent primers PCR; Sanger Sequencing; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Low expression correlates with advanced pT stage and lymph node metastasis; AUC for pN stage reported as 0.8209.

Description:

hsa_circ_0072309 (chr5:38523418-38530666-, host gene LIFR) is down-regulated in PTC. Lower expression is linked to advanced pT stage and lymph node metastasis, suggesting a suppressive association with progression and potential as a progression biomarker; it is predicted to bind miR-409-3p and other miRNAs.

Confidence score:

0.6841

Other information
Title:

Circular RNA expression and association with the clinicopathological characteristics in papillary thyroid carcinoma.

Journal: Oncology reports
Published: 2020
PubMed ID: 32468074
Study type:

combined biological and clinical study

Data availability: All data generated or analysed during the present study are included in this published article.
Code availability: -