circRNA basic information
circBase ID: hsa_circ_0005986
Name: -
Synonym: hsa_circ_005986
Host Gene: -
Genomic location(hg19): chr1:14057494-14068652:+
Genomic location(hg38): chr1:13730999-13742157:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissue samples; adjacent non-tumor tissue specimens

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: hsa-mir-3677, hsa-mir-188
Biological function: Potential tumor-suppressive role; associated with HCC proliferation and progression; may inhibit proliferation.
Molecular mechanism: Predicted circRNA-miRNA-mRNA network (ceRNA-like prediction) using TCGA-LIHC RNA-seq/miRNA-seq and miRNA target prediction tools.
Biological pathway or process:

proliferation (inhibits); inflammation (other); stemness (other); ceRNA regulation (other)

Detected method:
Q
Validation methods:

RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Clinical Sample Validation; Survival Analysis; ROC Analysis; Cohort Study; Bioinformatics Analysis

Clinical significance:

High hsa_circ_0005986 expression was associated with improved overall and progression-free survival and was an independent prognostic factor; low expression associated with larger tumors, advanced TNM stage, and higher BCLC stage.

Description:

hsa_circ_0005986 is down-regulated in HCC tissues and lower in more advanced TNM/BCLC stages. Higher expression predicts better overall and progression-free survival, supporting its role as an independent prognostic biomarker. Bioinformatic analyses further predicted a circRNA-miRNA-mRNA network (including hsa-mir-3677 and hsa-mir-188), suggesting potential involvement in proliferation/inflammation-related processes.

Confidence score:

0.6201

Other information
Title:

Circular noncoding RNA hsa_circ_0005986 as a prognostic biomarker for hepatocellular carcinoma.

Journal: Scientific reports
Published: 2021
PubMed ID: 34294754
Study type:

combined biological and clinical study

Data availability: TCGA-LIHC; 10.1038/s41598-021-94074-y
Code availability: https://github.com/cpreid2/gdc-rnaseq-tool