circRNA basic information
circBase ID: -
Name: hsa_circ_SOX13
Synonym: hsa_circ_001659
Host Gene: SOX13
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: nucleus
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

serum; peripheral blood

Cell lines:

SW620; LS174T; LoVo; HCT-8

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: RBBP5, Vimentin
Associated microRNA: -
Biological function: circ_001659 promotes CRC cell invasion, migration and metastasis, and serves as a diagnostic and prognostic serum biomarker for CRC.
Molecular mechanism: circ_001659 is mainly nuclear and recruits RBBP5 to the Vimentin promoter, increasing H3K4 trimethylation and epigenetically activating Vimentin transcription to promote invasion and metastasis.
Biological pathway or process:

migration (promotes); invasion (promotes); metastasis (promotes); EMT (promotes); TGF-beta/SMAD (other); other pathway/process (promotes)

Detected method:
Q
M
Validation methods:

Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; RT-qPCR; RNA-seq; Microarray; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; RIP (RNA Immunoprecipitation); RNA Pull-Down; ChIP / ChIP-seq; Luciferase Reporter Assay; Transfection; Transwell Assay; In Vivo Animal Model; Western Blot; Cohort Study; ROC Analysis; Bioinformatics Analysis

Clinical significance:

circ_001659 may serve as a reliable biomarker complementary for CEA in CRC early diagnosis and therapeutic monitoring; elevated serum circ_001659 after therapy predicts poor prognosis for CRC patients.

Description:

circ_001659 is up-regulated in serum from CRC patients and shows diagnostic value, including for early-stage and CEA-negative CRC. Functionally, it promotes CRC cell migration, invasion and metastasis. Mechanistically, nuclear circ_001659 interacts with RBBP5 and recruits it to the Vimentin promoter, increasing H3K4 trimethylation and activating Vimentin transcription.

Confidence score:

0.8913

Other information
Title:

Hsa_circ_001659 serves as a novel diagnostic and prognostic biomarker for colorectal cancer.

Journal: Biochemical and biophysical research communications
Published: 2021
PubMed ID: 33725570
Study type:

combined biological and clinical study

Data availability: GSE100206; GSE100063; TCGA COAD; https://doi.org/10.1016/j.bbrc.2021.02.121
Code availability: -