circRNA basic information
circBase ID: hsa_circ_0013339
Name: hsa_circ_SLC30A7
Synonym: circ_0013339
Host Gene: SLC30A7
Genomic location(hg19): chr1:101372407-101379362:+
Genomic location(hg38): chr1:100906851-100913806:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: Colorectal cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues; normal tissues; xenograft tumors

Cell lines:

NCM460; HCT116; SW480

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: SOX9, SLC30A7
Associated microRNA: miR-136-5p
Biological function: Promotes CRC cell colony formation, proliferation, viability, migration, invasion, and xenograft tumor growth; inhibits apoptosis.
Molecular mechanism: circ_0013339 functions as a ceRNA for miR-136-5p to elevate SOX9 expression and regulate CRC progression.
Biological pathway or process:

ceRNA regulation (promotes); proliferation (promotes); apoptosis (inhibits); migration (promotes); invasion (promotes); other pathway/process (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Bioinformatics Analysis; Luciferase Reporter Assay; Transfection; Colony Formation Assay; EdU Staining; CCK8; Western Blot; Annexin V/PI Flow Cytometry; Transwell Assay; In Vivo Animal Model; IHC (Immunohistochemistry)

Clinical significance:

Provides a new biomarker for the treatment and prognosis of CRC patients.

Description:

circ_0013339 is up-regulated in colorectal cancer tissues and cells and acts as an oncogenic circRNA. It promotes CRC cell proliferation, viability, migration, invasion, and xenograft tumor growth while suppressing apoptosis, mainly through a ceRNA mechanism involving the miR-136-5p/SOX9 axis. The study proposes circ_0013339 as a potential biomarker and therapeutic target for CRC.

Confidence score:

0.8175

Other information
Title:

CircRNA circ_0013339 Regulates the Progression of Colorectal Cancer Through miR-136-5p/SOX9 Axis.

Journal: Biochemical genetics
Published: 2024
PubMed ID: 37925667
Study type:

combined biological and clinical study

Data availability: The analyzed data sets generated during the present study are available from the corresponding author on reasonable request.
Code availability: -