circRNA basic information
circBase ID: hsa_circ_0086375
Name: hsa_circ_NFIB
Synonym: -
Host Gene: NFIB
Genomic location(hg19): chr9:14146687-14155892:-
Genomic location(hg38): chr9:14146688-14155893:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005184
MONDO name: pancreatic ductal adenocarcinoma
Disease details: pancreatic ductal adenocarcinoma
Disease DO ID:
3498, 3587
Disease MeSH ID:
D021441
Disease NCIt ID:
C9120
Disease ICD11 ID:
581089833
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

PDAC tissues; normal adjacent tissues (NATs); metastatic LNs; primary tumors

Cell lines:

PANC1; Capan-2; SW1990; HPDE; HLECs

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: PIK3R1, VEGF-C, Akt, GSK3beta
Associated microRNA: miR-486-5p
Biological function: inhibits lymphangiogenesis and lymph node metastasis; inhibits migration; suppresses tumorigenesis
Molecular mechanism: acts as a ceRNA/miRNA sponge for miR-486-5p, relieving repression of PIK3R1, inhibiting PI3K/Akt signaling and reducing VEGF-C expression/secretion
Biological pathway or process:

PI3K/AKT (inhibits); lymphangiogenesis (inhibits); metastasis (inhibits); migration (inhibits); ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Sanger Sequencing; divergent primers PCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; RNA Pull-Down; Luciferase Reporter Assay; Transfection; Transwell Assay; Tube Formation Assay; Western Blot; ELISA; IHC (Immunohistochemistry); In Vivo Animal Model; Survival Analysis; Bioinformatics Analysis; Clinical Sample Validation; Cohort Study

Clinical significance:

Low circNFIB1 expression is associated with LN metastasis and poor overall survival and disease-free survival; circNFIB1 is an independent prognostic factor for good prognosis

Description:

circNFIB1 (hsa_circ_0086375), derived from NFIB, is down-regulated in PDAC and inversely associated with lymph node metastasis. It mainly localizes to the cytoplasm and acts as a miR-486-5p sponge to upregulate PIK3R1, inhibit PI3K/AKT signaling, reduce VEGF-C, and thereby suppress lymphangiogenesis and lymphatic metastasis; low circNFIB1 predicts worse patient survival.

Confidence score:

0.8886

Other information
Title:

circNFIB1 inhibits lymphangiogenesis and lymphatic metastasis via the miR-486-5p/PIK3R1/VEGF-C axis in pancreatic cancer.

Journal: Molecular cancer
Published: 2020
PubMed ID: 32366257
Study type:

combined biological and clinical study

Data availability: GSE136569
Code availability: -