circRNA basic information
circBase ID: hsa_circ_0000448
Name: hsa_circ_GCN1L1
Synonym: -
Host Gene: GCN1L1
Genomic location(hg19): chr12:120592773-120593523:-
Genomic location(hg38): chr12:120154969-120155719:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005178
MONDO name: osteoarthritis
Disease details: temporomandibular joint osteoarthritis
Disease DO ID:
8398
Disease MeSH ID:
D010003
Disease NCIt ID:
C3293
Disease ICD11 ID:
558562409
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

synovial tissues / TMJ synovial tissues

Cell lines:

HEK-293T

In vivo animal model:

other disease animal model

circRNA-disease information
Expression pattern:
UP
Associated gene: TNF-alpha, TNF, p65, MMP3, MMP13, ADAMTS4
Associated microRNA: miR-330-3p
Biological function: promotes synoviocyte proliferation; induces chondrocyte apoptosis; promotes cartilage ECM degradation; induces inflammation; decreases anabolism of the extracellular matrix
Molecular mechanism: ceRNA/miRNA sponge mechanism: circGCN1L1 sponges miR-330-3p to upregulate TNF-alpha and activate NF-kappaB-associated inflammatory/apoptotic signaling.
Biological pathway or process:

proliferation (promotes); apoptosis (promotes); NF-kappaB (promotes); inflammation (promotes); ceRNA regulation (promotes)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; FISH / smFISH; Luciferase Reporter Assay; Bioinformatics Analysis; Transfection; EdU Staining; Cell Cycle Assay; Annexin V/PI Flow Cytometry; Transwell Assay; Western Blot; ELISA; In Vivo Animal Model; H&E Staining; IHC (Immunohistochemistry)

Clinical significance:

may have clinical significance for TMJOA

Description:

circGCN1L1 is up-regulated in TMJOA synovial tissues/cells and predominantly localizes in the cytoplasm. It functions as a ceRNA/miRNA sponge for miR-330-3p, thereby relieving repression on TNF (TNF-alpha) and promoting inflammatory responses, synoviocyte proliferation, chondrocyte apoptosis, and ECM catabolism; shcircGCN1L1 injection alleviates TMJOA in rats.

Confidence score:

0.8072

Other information
Title:

CircGCN1L1 promotes synoviocyte proliferation and chondrocyte apoptosis by targeting miR-330-3p and TNF-alpha in TMJ osteoarthritis.

Journal: Cell death & disease
Published: 2020
PubMed ID: 32332704
Study type:

combined biological and clinical study

Data availability: Supplementary Information accompanies this paper at (10.1038/s41419-020-2447-7).
Code availability: -