circRNA basic information
circBase ID: hsa_circ_0000260
Name: hsa_circ_SMC3
Synonym: circSMC3
Host Gene: SMC3
Genomic location(hg19): chr10:112356155-112358048:+
Genomic location(hg38): chr10:110596397-110598290:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric cancer tissues; adjacent normal tissues

Cell lines:

GES-1; AGS; SGC-7901; BGC-823; MGC-803; HEK-293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: TJP1
Associated microRNA: miR-4720-3p
Biological function: promotes proliferation and motility (invasion) of gastric cancer cells; promotes tumor growth in vivo
Molecular mechanism: acts as a miRNA sponge for miR-4720-3p to regulate TJP1 via a circSMC3/miR-4720-3p/TJP1 axis
Biological pathway or process:

proliferation (promotes); invasion (promotes); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Transfection; CCK8; Colony Formation Assay; Transwell Assay; Luciferase Reporter Assay; RNA Pull-Down; Western Blot; In Vivo Animal Model; Survival Analysis

Clinical significance:

High circSMC3 expression levels are associated with shorter overall survival in gastric cancer patients.

Description:

circSMC3 is up-regulated in gastric cancer tissues and cell lines and functions as an oncogenic circRNA. It sponges miR-4720-3p, relieving repression of TJP1, thereby promoting gastric cancer cell proliferation and motility and enhancing xenograft tumor growth; high circSMC3 predicts shorter overall survival.

Confidence score:

0.8558

Other information
Title:

CircSMC3 regulates gastric cancer tumorigenesis by targeting miR-4720-3p/TJP1 axis.

Journal: Cancer medicine
Published: 2020
PubMed ID: 32314520
Study type:

combined biological and clinical study

Data availability: -
Code availability: -