circRNA basic information
circBase ID: hsa_circ_0001649
Name: hsa_circ_SHPRH
Synonym: -
Host Gene: SHPRH
Genomic location(hg19): chr6:146209155-146216113:-
Genomic location(hg38): chr6:145888019-145894977:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tumor tissues; paired adjacent nonmalignant tissues

Cell lines:

HHCC; H-97; HepG2; HuH-7; Li-7; SMMC-7721; HepG2.2.15; HL-7702

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: SHPRH, Ago2
Associated microRNA: miR-127-5p, miR-612, miR-4688
Biological function: inhibits proliferation and migration; inhibits tumorigenesis; inhibits EMT
Molecular mechanism: ceRNA mechanism: circ-0001649 sponges miR-127-5p/miR-612/miR-4688 to activate SHPRH
Biological pathway or process:

proliferation (inhibits); migration (inhibits); EMT (inhibits); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Sanger Sequencing; Back-Splice Junction PCR / divergent primers PCR; Nuclear-Cytoplasmic Fractionation; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; Transfection; CCK8; Colony Formation Assay; EdU Staining; Transwell Assay; Western Blot; IHC (Immunohistochemistry); Clinical Sample Validation; In Vivo Animal Model

Clinical significance:

low expression of circ-0001649 in the tumor tissues was associated with grade of differentiation and tumor satellite

Description:

hsa_circ_0001649 (circ-0001649), derived from the SHPRH locus, is down-regulated in hepatocellular carcinoma tissues and cell lines. It suppresses HCC proliferation, migration and EMT by acting as a ceRNA that sponges miR-127-5p/miR-612/miR-4688, thereby increasing SHPRH expression and inhibiting tumor growth in a xenograft model.

Confidence score:

0.8591

Other information
Title:

Circular RNA hsa_circ_0001649 inhibits hepatocellular carcinoma progression via multiple miRNAs sponge.

Journal: Aging
Published: 2019
PubMed ID: 31137016
Study type:

combined biological and clinical study

Data availability: -
Code availability: -