circRNA basic information
circBase ID: hsa_circ_0012152
Name: hsa_circ_RNF220
Synonym: circRNF220
Host Gene: RNF220
Genomic location(hg19): chr1:44877652-44878394:+
Genomic location(hg38): chr1:44411980-44412722:+
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0004996
MONDO name: childhood acute myeloid leukemia
Disease details: pediatric acute myeloid leukemia
Disease DO ID:
0070323
Disease MeSH ID:
-
Disease NCIt ID:
C9160
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

bone marrow; peripheral blood

Cell lines:

HL-60; THP-1; K562; HEK-293 T; 293 T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: MYSM1, IER2
Associated microRNA: miR-30a
Biological function: Enhances proliferation, accelerates cell cycle progression, and inhibits apoptosis in AML cells; associated with relapse.
Molecular mechanism: Acts as a competing endogenous RNA (miRNA sponge) for miR-30a, increasing expression of miR-30a targets (e.g., MYSM1 and IER2).
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); cell cycle (promotes); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; divergent primers PCR; RNase R Treatment; Sanger Sequencing; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; RNA-seq; Clinical Sample Validation; Transfection; CCK8; Cell Cycle Assay; Annexin V/PI Flow Cytometry; TUNEL; RNA Pull-Down; Luciferase Reporter Assay; Bioinformatics Analysis; ROC Analysis; Survival Analysis; Cohort Study

Clinical significance:

High circRNF220 distinguishes AML from controls/other hematological diseases with high sensitivity and specificity and independently predicts relapse (unfavorable prognostic marker).

Description:

circRNF220 is up-regulated in pediatric AML (BM and PB) and serves as a diagnostic marker and an independent predictor of relapse (high expression indicates poorer relapse-free survival). Functionally, circRNF220 promotes AML cell proliferation/cell-cycle progression and suppresses apoptosis, at least partly by sponging miR-30a to increase expression of targets such as MYSM1 and IER2.

Confidence score:

0.889

Other information
Title:

CircRNF220, not its linear cognate gene RNF220, regulates cell growth and is associated with relapse in pediatric acute myeloid leukemia.

Journal: Molecular cancer
Published: 2021
PubMed ID: 34702297
Study type:

combined biological and clinical study

Data availability: The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.
Code availability: -