circRNA basic information
circBase ID: -
Name: hsa_circ_FNDC3B
Synonym: -
Host Gene: FNDC3B
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0021063
MONDO name: malignant colon neoplasm
Disease details: Colon cancer
Disease DO ID:
219
Disease MeSH ID:
-
Disease NCIt ID:
C9242
Disease ICD11 ID:
1265576634
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

CC tissues; paired normal tissues

Cell lines:

DLD1; HCT116; SW480; LoVo; Caco2; HT29; NCM460

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: -
Biological function: inhibits proliferation; inhibits invasion; inhibits migration
Molecular mechanism: Protein-coding circRNA: circFNDC3B encodes circFNDC3B-218aa; the inhibitory phenotypes in CC are mainly attributed to circFNDC3B-218aa rather than the circular RNA form.
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; RT-qPCR; FISH / smFISH; Clinical Sample Validation; Cohort Study; Survival Analysis; Transfection; CCK8; Colony Formation Assay; Transwell Assay; Wound Healing Assay

Clinical significance:

Patients with lower circFNDC3B expression had a significantly shorter OS than patients with higher expression; circFNDC3B expression was an independent prognostic factor for CC prognosis.

Description:

circFNDC3B is down-regulated in colon cancer tissues and cell lines and functions as a tumor suppressor by inhibiting proliferation, invasion, and migration. Low circFNDC3B expression is associated with shorter overall survival, indicating prognostic relevance.

Confidence score:

0.7996

Other information
Title:

A novel protein encoded by circFNDC3B inhibits tumor progression and EMT through regulating Snail in colon cancer.

Journal: Molecular cancer
Published: 2020
PubMed ID: 32241279
Study type:

combined biological and clinical study

Data availability: All data in our study are availability upon request.
Code availability: -