circRNA basic information
circBase ID: -
Name: -
Synonym: circ-001971
Host Gene: -
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

colorectal cancer (T); matched non-cancerous tissues (N); tumor tissues; non-cancerous tissue samples

Cell lines:

FHC; HT29; HCT116; LoVo; SW480; SW620; HUVEC; HEK293

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: VEGFA, AGO2
Associated microRNA: miR-29c-3p
Biological function: promotes CRC cell proliferation, invasion/metastasis and angiogenesis; promotes tumor growth in vivo
Molecular mechanism: Acts as a ceRNA/miRNA sponge for miR-29c-3p to relieve repression of VEGFA; AGO2-associated binding confirmed
Biological pathway or process:

proliferation (promotes); invasion (promotes); angiogenesis (promotes); ceRNA regulation (promotes); VEGF/VEGFR (promotes)

Detected method:
Q
Validation methods:

RNase R Treatment; RT-qPCR; Clinical Sample Validation; Survival Analysis; ROC Analysis; Transfection; MTT; EdU Staining; Transwell Assay; Tube Formation Assay; Western Blot; IHC (Immunohistochemistry); H&E Staining; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; In Vivo Animal Model

Clinical significance:

High circ-001971 expression was related to advanced TNM stages, lymphatic metastasis, and adverse prognosis; ROC analysis indicated potential diagnostic and prognostic capability in CRC.

Description:

circ-001971 is up-regulated in colorectal cancer tissues/cell lines and promotes proliferation, invasion/metastasis-related behavior and angiogenesis. Mechanistically, it functions as a ceRNA that binds miR-29c-3p in an AGO2-associated manner, relieving miR-29c-3p-mediated repression of VEGFA; higher circ-001971 correlates with advanced stage and poorer overall survival.

Confidence score:

0.8154

Other information
Title:

The circular RNA 001971/miR-29c-3p axis modulates colorectal cancer growth, metastasis, and angiogenesis through VEGFA.

Journal: Journal of experimental & clinical cancer research : CR
Published: 2020
PubMed ID: 32430042
Study type:

combined biological and clinical study

Data availability: GSE126093
Code availability: -