circRNA basic information
circBase ID: hsa_circ_0008305
Name: hsa_circ_PTK2
Synonym: hsa_circRNA_104703
Host Gene: PTK2
Genomic location(hg19): chr8:141799572-141840625:-
Genomic location(hg38): chr8:140789473-140830526:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005233
MONDO name: non-small cell lung carcinoma
Disease details: non-small cell lung cancer
Disease DO ID:
3908
Disease MeSH ID:
D002289
Disease NCIt ID:
C2926
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

NSCLC tissues; adjacent noncancerous lung tissues; metastatic NSCLC tissues; non-metastatic NSCLC tissues

Cell lines:

BEAS-2B; A549; H1299; H1650; SPC-A1; Calu3; H226; H520; SK-MES-1; HEK 293 T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: TIF1gamma, AGO2, Snail
Associated microRNA: miR-429, miR-200b-3p
Biological function: Inhibits TGF-beta-induced EMT, migration/invasion, and metastasis in NSCLC; promotes TIF1gamma expression.
Molecular mechanism: Acts as a miRNA sponge for miR-429/miR-200b-3p to protect TIF1gamma from miRNA-mediated repression; attenuates TGF-beta/Smad signaling output (e.g., Snail).
Biological pathway or process:

EMT (inhibits); invasion (inhibits); metastasis (inhibits); TGF-beta/SMAD (inhibits); ceRNA regulation (promotes)

Detected method:
Q
B
M
Validation methods:

Microarray; RT-qPCR; Northern Blot; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; FISH / smFISH; Transfection; Transwell Assay; In Vivo Animal Model; H&E Staining; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

circPTK2 expression is down-regulated in human NSCLC tissues and is significantly lower in metastatic NSCLC tissues than non-metastatic counterparts; positively correlated with TIF1gamma expression.

Description:

In NSCLC, circPTK2 (hsa_circ_0008305) is down-regulated during TGF-beta-induced EMT and in patient tumors, especially metastatic tissues. It suppresses EMT, invasion, and metastasis by sponging miR-429/miR-200b-3p to relieve repression of TIF1gamma, thereby dampening TGF-beta/Smad signaling output such as Snail.

Confidence score:

0.8491

Other information
Title:

Circular RNA hsa_circ_0008305 (circPTK2) inhibits TGF-beta-induced epithelial-mesenchymal transition and metastasis by controlling TIF1gamma in non-small cell lung cancer.

Journal: Molecular cancer
Published: 2018
PubMed ID: 30261900
Study type:

combined biological and clinical study

Data availability: Additional file 2: Table S1; Additional file 10: Table S3; GSE36681
Code availability: -