circRNA basic information
circBase ID: hsa_circ_0020123
Name: hsa_circ_PDZD8
Synonym: circPDZD8
Host Gene: PDZD8
Genomic location(hg19): chr10:119042605-119049859:-
Genomic location(hg38): chr10:117283094-117290348:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric cancer tissues; matched normal tissues; tumor tissues of nude mice

Cell lines:

GES-1; SGC-7901; MGC-803; BGC-823; AGS; NCI-N87

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: CHD9
Associated microRNA: miR-197-5p
Biological function: promotes proliferation and migration and tumor growth in gastric cancer
Molecular mechanism: Acts as a ceRNA/miRNA sponge for miR-197-5p to upregulate CHD9 (miR-197-5p/CHD9 axis).
Biological pathway or process:

ceRNA regulation (promotes); proliferation (promotes); migration (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; Nuclear-Cytoplasmic Fractionation; Luciferase Reporter Assay; Transfection; MTT; Colony Formation Assay; Transwell Assay; Western Blot; In Vivo Animal Model; Clinical Sample Validation; Survival Analysis; Bioinformatics Analysis

Clinical significance:

High circPDZD8 levels are associated with shorter overall survival in gastric cancer patients.

Description:

circPDZD8 is up-regulated in gastric cancer and mainly localized in the cytoplasm. It promotes gastric cancer cell proliferation and migration and tumor growth by acting as a ceRNA that sponges miR-197-5p, thereby increasing CHD9 expression via the miR-197-5p/CHD9 axis. High circPDZD8 expression is associated with poorer overall survival.

Confidence score:

0.7369

Other information
Title:

CircPDZD8 promotes gastric cancer progression by regulating CHD9 via sponging miR-197-5p.

Journal: Aging
Published: 2020
PubMed ID: 33049714
Study type:

combined biological and clinical study

Data availability: -
Code availability: -