circRNA basic information
circBase ID: -
Name: hsa_circ_NSUN2
Synonym: circRNA_103783
Host Gene: NSUN2
Genomic location(hg19): chr5:6623326-6625782:.
Genomic location(hg38): chr5:6623213-6625669:.
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0024331
MONDO name: colorectal carcinoma
Disease details: colorectal carcinoma
Disease DO ID:
0080199
Disease MeSH ID:
-
Disease NCIt ID:
C2955
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues; adjacent normal tissues; normal colorectal tissues; colorectal adenomas; liver metastasis tissues; primary colorectal cancer tissues; serum

Cell lines:

DLD1; HCT116; LoVo; SW620; SW1116; 293T; TC71

In vivo animal model:

patient-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: YTHDC1, IGF2BP2, HMGA2, METTL3, CXCR4
Associated microRNA: -
Biological function: promotes liver metastasis and invasion/migration of CRC cells; enhances EMT
Molecular mechanism: m6A-dependent nuclear export mediated by YTHDC1; formation of circNSUN2/IGF2BP2/HMGA2 ternary complex to stabilize HMGA2 mRNA
Biological pathway or process:

metastasis (promotes); invasion (promotes); migration (promotes); EMT (promotes); m6A modification (other); mRNA stability (promotes)

Detected method:
Q
B
M
Validation methods:

Microarray; RNase R Treatment; divergent primers PCR; RT-qPCR; Sanger Sequencing; Northern Blot; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; Clinical Sample Validation; Survival Analysis; In Vivo Animal Model; Transfection; RNA Pull-Down; RIP (RNA Immunoprecipitation); CLIP; MeRIP / MeRIP-seq; RNA-seq; Western Blot; IF (Immunofluorescence); Luciferase Reporter Assay; Transwell Assay

Clinical significance:

frequently upregulated in tumor tissues and serum samples from CRC patients with liver metastasis and predicts poorer patient survival; higher in LM tissues than in primary CRC tissues

Description:

circNSUN2 is up-regulated in CRC with liver metastasis (in tumor tissues and serum) and is associated with poor survival. Its m6A-dependent export (via YTHDC1) increases cytoplasmic circNSUN2, which forms a ternary complex with IGF2BP2 and HMGA2 to stabilize HMGA2 mRNA, promoting invasion/EMT and liver metastasis.

Confidence score:

0.8798

Other information
Title:

N6-methyladenosine modification of circNSUN2 facilitates cytoplasmic export and stabilizes HMGA2 to promote colorectal liver metastasis.

Journal: Nature communications
Published: 2019
PubMed ID: 31619685
Study type:

combined biological and clinical study

Data availability: GSE121895; PRJNA549980 (SRP202052); PASS01424
Code availability: -