circRNA basic information
circBase ID: hsa_circ_0008796
Name: hsa_circ_CDKN2B-AS1
Synonym: chr9:22046750-22097364+
Host Gene: CDKN2B-AS1
Genomic location(hg19): chr9:22046749-22097363:+
Genomic location(hg38): chr9:22046750-22097364:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005075
MONDO name: thyroid gland papillary carcinoma
Disease details: papillary thyroid carcinoma
Disease DO ID:
3969
Disease MeSH ID:
-
Disease NCIt ID:
C4035
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumour tissues; normal tissues; thyroid tissues

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: metastatic tumour antigen 1, hTERT
Associated microRNA: hsa-miR-490-5p, hsa-miR-224, hsa-miR-1228, hsa-miR-576-5p, hsa-miR-611
Biological function: Associated with BRAFV600E mutation in PTC; potential biomarker for diagnosis/progression evaluation.
Molecular mechanism: Predicted to act as a miRNA sponge (ceRNA-like).
Biological pathway or process:

ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RNase R Treatment; RT-qPCR; divergent primers PCR; Sanger Sequencing; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Associated with BRAFV600E mutation; AUC for BRAF mutation discrimination reported as 0.7222.

Description:

hsa_circ_0008796 (chr9:22046750-22097364+, host gene CDKN2B-AS1) is up-regulated in PTC and is significantly associated with BRAFV600E mutation. It is predicted to interact with multiple miRNAs, supporting a potential miRNA-sponge role and biomarker utility.

Confidence score:

0.6841

Other information
Title:

Circular RNA expression and association with the clinicopathological characteristics in papillary thyroid carcinoma.

Journal: Oncology reports
Published: 2020
PubMed ID: 32468074
Study type:

combined biological and clinical study

Data availability: All data generated or analysed during the present study are included in this published article.
Code availability: -