circRNA basic information
circBase ID: hsa_circ_0003596
Name: hsa_circ_COL5A1
Synonym: circ_0003596
Host Gene: COL5A1
Genomic location(hg19): chr9:137716445-137717750:+
Genomic location(hg38): chr9:134824599-134825904:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005005
MONDO name: clear cell renal carcinoma
Disease details: clear cell renal cell carcinoma / ccRCC
Disease DO ID:
4467
Disease MeSH ID:
-
Disease NCIt ID:
C4033
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

ccRCC tissue; matched non-tumor tissues; adjacent tissues; primary ccRCC tissues; metastatic ccRCC tissues; kidney cancer tissues; xenograft tissue; lungs

Cell lines:

HK-2; 786-O; Caki-1; Caki-2; ACHN

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: IGF1R, AGO2, PI3K, AKT, cyclinD1, p-AKT, p-PI3K
Associated microRNA: miR-502-5p
Biological function: Promotes ccRCC cell proliferation, tumor growth, infiltration, migration and metastatic capacity; knockdown suppresses these malignant phenotypes.
Molecular mechanism: hsa_circ_0003596 functions as a cytoplasmic ceRNA/miRNA sponge for miR-502-5p, thereby upregulating IGF1R and activating the downstream PI3K/AKT signaling cascade.
Biological pathway or process:

PI3K/AKT (promotes); proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); ceRNA regulation (other)

Detected method:
Q
M
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; RT-qPCR; Microarray; FISH / smFISH; Clinical Sample Validation; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Colony Formation Assay; Transwell Assay; Wound Healing Assay; In Vivo Animal Model; IHC (Immunohistochemistry); H&E Staining; Western Blot; Bioinformatics Analysis

Clinical significance:

hsa_circ_0003596 was associated with distant metastasis of renal cancer and may serve as a possible biomarker and therapeutic target against ccRCC.

Description:

hsa_circ_0003596 is up-regulated in ccRCC tissues and cell lines and is associated with distant metastasis. Functionally, it acts as an oncogenic circRNA that promotes proliferation, tumor growth, migration, infiltration/invasion and lung metastasis. Mechanistically, cytoplasmic hsa_circ_0003596 sponges miR-502-5p to increase IGF1R expression and activate the downstream PI3K/AKT signaling cascade, suggesting potential biomarker and therapeutic-target value in ccRCC.

Confidence score:

0.8748

Other information
Title:

Hsa_circ_0003596 enhances the development of cell renal clear cell carcinoma through the miR-502-5p/IGF1/PI3K/AKT axis.

Journal: The journal of gene medicine
Published: 2023
PubMed ID: 37392008
Study type:

combined biological and clinical study

Data availability: GSE100186; GSE137836; TCGA-GDC website (https://portal.gdc.cancer.gov/); available from the corresponding author on reasonable request
Code availability: -