circRNA basic information
circBase ID: -
Name: hsa_circ_PTBP3
Synonym: circPTBP3 / circPTPB3
Host Gene: PTBP3
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: nucleus
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

primary tumor tissues; adjacent mucosa tissues; plasma exosomes; peritoneum; peritoneal metastatic tumor tissues

Cell lines:

MGC803; AGS; HGC27; MKN45; SNU-1; KATOIII; MET-5A; GES-1; NCI-N87; HMrSV5

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: TFAP2B, SGK1
Associated microRNA: -
Biological function: Promotes mesothelial-mesenchymal transition (MMT) of mesothelial cells and promotes gastric cancer peritoneal metastasis by inducing peritoneal fibrosis.
Molecular mechanism: Nuclear circPTBP3 recruits transcription factor TFAP2B to SGK1 promoter regions to initiate SGK1 transcription, thereby enhancing MMT and peritoneal metastasis.
Biological pathway or process:

metastasis (promotes); EMT (promotes); fibrosis (promotes); other pathway/process (other)

Detected method:
Q
S
Validation methods:

RNA-seq; Bioinformatics Analysis; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; RT-qPCR; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; RNA Pull-Down; RIP (RNA Immunoprecipitation); ChIP / ChIP-seq; Transfection; Western Blot; Transwell Assay; In Vivo Animal Model; H&E Staining; IF (Immunofluorescence); IHC (Immunohistochemistry); Survival Analysis; ROC Analysis; Clinical Sample Validation

Clinical significance:

Plasma exosomal circPTBP3 is significantly higher in GCPM patients and shows diagnostic value (AUC=0.866); high plasma exosomal circPTBP3 is associated with shorter OS and is an independent prognostic factor.

Description:

Exosomal circPTBP3 is up-regulated in gastric cancer patients with peritoneal metastasis and promotes mesothelial-mesenchymal transition and peritoneal fibrosis, facilitating peritoneal metastasis. Mechanistically, nuclear circPTBP3 recruits TFAP2B to SGK1 promoter regions to activate SGK1 transcription. Plasma exosomal circPTBP3 shows diagnostic value for GCPM and high levels predict poorer overall survival.

Confidence score:

0.8939

Other information
Title:

Tumor exosomal circPTBP3 drives gastric cancer peritoneal metastasis via mesothelial-mesenchymal transition.

Journal: Cell death & disease
Published: 2025
PubMed ID: 40500263
Study type:

combined biological and clinical study

Data availability: GSE174237; Science Data Bank (ScienceDB) DIO number 10.57760/sciencedb.08330
Code availability: -