circRNA basic information
circBase ID: hsa_circ_0039053
Name: hsa_circ_ITGAL
Synonym: circITGAL
Host Gene: ITGAL
Genomic location(hg19): chr16:30510394-30510810:+
Genomic location(hg38): chr16:30499073-30499489:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues

Cell lines:

HepG2; SMMC-7721; Huh-7; Hep3B; HCCLM3; LO2

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: USP21
Associated microRNA: hsa-miR-637
Biological function: promotes proliferation and invasion and tumor growth in hepatocellular carcinoma
Molecular mechanism: hsa_circ_0039053 acts as a competing endogenous RNA to sponge miR-637 and thereby increases USP21 expression
Biological pathway or process:

proliferation (promotes); invasion (promotes); metastasis (promotes); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; Bioinformatics Analysis; RNase R Treatment; Actinomycin D / DRB Stability Assay; RT-qPCR; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Transfection; CCK8; Colony Formation Assay; EdU Staining; Transwell Assay; RNA Pull-Down; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry)

Clinical significance:

High hsa_circ_0039053 expression was linked to advanced TNM stage and lymph node metastasis in HCC patients

Description:

In hepatocellular carcinoma, hsa_circ_0039053 (circITGAL) is up-regulated and promotes proliferation, invasion, and in vivo tumor growth. It predominantly localizes to the cytoplasm and functions as a ceRNA by sponging miR-637 to upregulate USP21.

Confidence score:

0.8634

Other information
Title:

Identification of hsa_circ_0039053 as an up-regulated and oncogenic circRNA in hepatocellular carcinoma via the miR-637-mediated USP21 activation.

Journal: Journal of Cancer
Published: 2020
PubMed ID: 33123285
Study type:

combined biological and clinical study

Data availability: GSE97332; GSE94508
Code availability: -