circRNA basic information
circBase ID: hsa_circ_0004874
Name: hsa_circ_SNX25
Synonym: circSNX25
Host Gene: SNX25
Genomic location(hg19): chr4:186168447-186188309:+
Genomic location(hg38): chr4:185247293-185267155:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005494
MONDO name: triple-negative breast carcinoma
Disease details: triple-negative breast cancer / TNBC
Disease DO ID:
0060081
Disease MeSH ID:
D064726
Disease NCIt ID:
C71732
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

TNBC tissues; adjacent noncancerous tissues

Cell lines:

MDA-MB-231; MDA-MB-468; BT-549; SUM-1315; Hs-578T; MCF-10A

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: COPB1, SP1
Associated microRNA: -
Biological function: Promotes TNBC cell proliferation, cell cycle progression and xenograft tumor growth; inhibits apoptosis.
Molecular mechanism: SP1 binds the SNX25 promoter to enhance circSNX25 biogenesis, and circSNX25 physically interacts with COPB1 in TNBC.
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); cell cycle (promotes); other pathway/process (other)

Detected method:
Q
S
Validation methods:

Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; RT-qPCR; RNA-seq; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; RIP (RNA Immunoprecipitation); RNA Pull-Down; ChIP / ChIP-seq; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Annexin V/PI Flow Cytometry; Cell Cycle Assay; TUNEL; In Vivo Animal Model; H&E Staining; Western Blot; Bioinformatics Analysis

Clinical significance:

CircSNX25 may serve as a diagnostic and therapeutic biomarker, a prognostic marker, and a therapeutic target for TNBC.

Description:

circSNX25 is an up-regulated circular RNA in TNBC tissues and cells. It promotes TNBC proliferation, cell cycle progression and xenograft tumor growth while suppressing apoptosis. Mechanistically, SP1 enhances circSNX25 biogenesis through the SNX25 promoter, and circSNX25 physically interacts with COPB1, supporting its potential value as a TNBC biomarker and therapeutic target.

Confidence score:

0.8574

Other information
Title:

CircSNX25 mediated by SP1 promotes the carcinogenesis and development of triple-negative breast cancer.

Journal: Cellular signalling
Published: 2023
PubMed ID: 37331414
Study type:

combined biological and clinical study

Data availability: Data will be made available on request; Supplementary data to this article can be found online at https://doi.org/10.1016/j.cellsig.2023.110776
Code availability: -