circRNA basic information
circBase ID: hsa_circ_0084188
Name: hsa_circ_SPIDR
Synonym: circ_0084188
Host Gene: SPIDR
Genomic location(hg19): chr8:48192449-48206619:+
Genomic location(hg38): chr8:47279861-47294030:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues; adjacent normal tissue specimens; tumor tissues

Cell lines:

HCT116; SW480; FHC

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: KLF12, Ago2
Associated microRNA: miR-654-3p
Biological function: Promotes CRC cell proliferation, migration, invasion, stemness and tumor growth; inhibits apoptosis.
Molecular mechanism: Acts as a ceRNA by sponging miR-654-3p to upregulate KLF12.
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); stemness (promotes); apoptosis (inhibits); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RT-qPCR; Sanger Sequencing; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Transfection; CCK8; EdU Staining; Colony Formation Assay; Annexin V/PI Flow Cytometry; Transwell Assay; Western Blot; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; In Vivo Animal Model; IHC (Immunohistochemistry)

Clinical significance:

High expression of circ_0084188 was associated with an advanced clinical stage in CRC patients.

Description:

circ_0084188 is up-regulated in colorectal cancer tissues/cells and mainly localizes to the cytoplasm. It promotes CRC proliferation, migration, invasion, stemness and tumor growth while inhibiting apoptosis by sponging miR-654-3p to upregulate KLF12 (circ_0084188/miR-654-3p/KLF12 ceRNA axis). High circ_0084188 expression is associated with advanced clinical stage.

Confidence score:

0.8465

Other information
Title:

Circ_0084188 promotes colorectal cancer progression by sponging miR-654-3p and regulating kruppel-like factor 12.

Journal: The Kaohsiung journal of medical sciences
Published: 2023
PubMed ID: 37698263
Study type:

combined biological and clinical study

Data availability: -
Code availability: -