circRNA basic information
circBase ID: hsa_circ_0001460
Name: hsa_circ_NEIL3
Synonym: circNEIL3
Host Gene: NEIL3
Genomic location(hg19): chr4:178274461-178281831:+
Genomic location(hg38): chr4:177353307-177360677:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC primary tumors; liver metastatic tumor tissues; adjacent normal tissues

Cell lines:

BT549; MDA-MB-231; A549; H1299; SW480; SW620; MCF10A

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: YBX1, Nedd4L
Associated microRNA: -
Biological function: inhibits tumor metastasis; suppresses migration and invasion
Molecular mechanism: Directly binds YBX1 and recruits E3 ligase Nedd4L to enhance YBX1 polyubiquitination and proteasomal degradation, thereby repressing metastasis.
Biological pathway or process:

metastasis (inhibits); migration (inhibits); invasion (inhibits); ubiquitination (promotes)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; RNase R Treatment; divergent primers PCR; Sanger Sequencing; Back-Splice Junction PCR; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; RNA Pull-Down; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; Transwell Assay; Colony Formation Assay; In Vivo Animal Model; H&E Staining; IHC (Immunohistochemistry); IF (Immunofluorescence); Western Blot; Bioinformatics Analysis; Survival Analysis

Clinical significance:

Lower circNEIL3 expression is associated with lymph node metastasis and shorter overall survival in CRC; circNEIL3 may predict metastatic tendency and worse outcome.

Description:

circNEIL3 (hsa_circ_0001460), derived from the NEIL3 gene, is down-regulated in CRC liver metastatic lesions versus paired primary tumors and is repressed by TGFbeta. It inhibits migration/invasion and metastasis by directly binding the RBP YBX1 and recruiting the E3 ligase Nedd4L to promote YBX1 polyubiquitination and proteasomal degradation. Clinically, lower circNEIL3 levels are associated with lymph node metastasis and poorer overall survival in CRC.

Confidence score:

0.8816

Other information
Title:

circNEIL3 inhibits tumor metastasis through recruiting the E3 ubiquitin ligase Nedd4L to degrade YBX1.

Journal: Proceedings of the National Academy of Sciences of the United States of America
Published: 2023
PubMed ID: 36961927
Study type:

combined biological and clinical study

Data availability: GSE165576; PXD039394; HRA003989
Code availability: -