circRNA basic information
circBase ID: hsa_circ_0009061
Name: hsa_circ_KDM1A
Synonym: circ 3_2_2a / circLSD1 3_2_2a
Host Gene: KDM1A
Genomic location(hg19): chr1:23356961-23377013:+
Genomic location(hg38): chr1:23030468-23050520:+
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005061
MONDO name: lung adenocarcinoma
Disease details: lung adenocarcinoma / LUAD
Disease DO ID:
3910
Disease MeSH ID:
C538231
Disease NCIt ID:
C3512
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

LUAD tissue; adjacent non-tumor tissue

Cell lines:

PC9; PSAE; A549

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UN
Associated gene: -
Associated microRNA: -
Biological function: participates in intercellular communication (release via EVs/RNPs and uptake by recipient cells)
Molecular mechanism: packaged and released via extracellular vesicles (EVs) from cancer cells and via ribonucleoprotein (RNP) complexes from non-cancer cells; taken up by recipient cells
Biological pathway or process:

other pathway/process (other)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RT-qPCR; FISH / smFISH; RNase R Treatment; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation

Clinical significance:

-

Description:

This circLSD1 RNA (from KDM1A) is mainly cytoplasmic and can be exported into the extracellular space, with cancer cells packaging it in EVs while non-cancer cells release it in RNP-protected forms. Extracellular circLSD1 RNAs can be taken up by recipient lung cells, supporting a role in intercellular communication in the lung cancer microenvironment.

Confidence score:

0.6091

Other information
Title:

Vesicular Release and Uptake of Circular LSD1-RNAs from Non-Cancer and Cancer Lung Cells.

Journal: International journal of molecular sciences
Published: 2023
PubMed ID: 37762282
Study type:

combined biological and clinical study

Data availability: -
Code availability: -