circRNA basic information
circBase ID: -
Name: hsa_circ_GPC3
Synonym: circGPC3
Host Gene: GPC3
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: Hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumorous tissue; adjacent non-tumorous liver tissue; blood; plasma

Cell lines:

LO2; Huh7; HepG2; SNU449; HEK293K; HEK293T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: ASPM, CENPW, KIF14, NEK2, POLQ, TOP2A, DBF4, ERCC6L, E2F7, GPC3, MMS22L, Ago2
Associated microRNA: miR-378a-3p, miR-378c
Biological function: promotes proliferation; promotes cell cycle progression; promotes cell transformation (anchorage-independent growth); promotes migration; promotes invasion
Molecular mechanism: Acts as a miRNA sponge/ceRNA for miR-378a-3p to upregulate ASPM; interacts with Ago2/RISC; directly binds miR-378a-3p (pull-down); validated by luciferase reporters with WT/Mut binding sites.
Biological pathway or process:

proliferation (promotes); cell cycle (promotes); migration (promotes); invasion (promotes); metastasis (other); ceRNA regulation (promotes); Wnt/beta-catenin (other)

Detected method:
Q
S
M
Validation methods:

Microarray; RNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; Cell Cycle Assay; Colony Formation Assay; CCK8; Transwell Assay; Wound Healing Assay; ROC Analysis; Bioinformatics Analysis

Clinical significance:

High circGPC3 expression is significantly associated with high tumor grade; circGPC3 has potential as a non-invasive prognostic biomarker with plasma levels highest in higher-grade tumors and lowest in healthy individuals; ROC/logistic regression indicates ability to distinguish tumor vs non-tumorous tissue and tumor grades.

Description:

circGPC3 is up-regulated in HCC tumors and is linked to higher tumor grade. It promotes proliferation, cell-cycle progression, transformation, migration and invasion, and functions as a ceRNA by sponging miR-378a-3p (and predicted miR-378c) to upregulate ASPM, supported by luciferase, Ago2-RIP and pull-down assays.

Confidence score:

0.8778

Other information
Title:

Clinicopathological-Associated Regulatory Network of Deregulated circRNAs in Hepatocellular Carcinoma.

Journal: Cancers
Published: 2021
PubMed ID: 34199580
Study type:

combined biological and clinical study

Data availability: GSE155949; GSE156087; GSE138178
Code availability: -