circRNA basic information
circBase ID: hsa_circ_0006302
Name: hsa_circ_ASH2
Synonym: circASH2 / circular RNA ASH2
Host Gene: ASH2
Genomic location(hg19): chr8:37971709-37978667:+
Genomic location(hg38): chr8:38114191-38121149:+
Subcellular localization: nucleus
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tumor tissue; matched nontumor tissues; primary HCC tissues

Cell lines:

HepG2; Huh7; HCCLM3; HA22T; SK-Hep1; LO2

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: TPM4 mRNA, TPM4 pre-mRNA, YBX1, hnRNPA1, hnRNPD, hnRNPK, UPF1, DHX9
Associated microRNA: -
Biological function: Suppresses HCC metastasis by impairing cytoskeleton assembly, reducing cell adhesion, migration and invasion; promotes decay of TPM4 transcripts.
Molecular mechanism: Acts as a nuclear scaffold that binds TPM4 mRNA/pre-mRNA and promotes YBX1 liquid-liquid phase separation, assembling a YBX1/hnRNP complex to alter TPM4 transcript splicing and trigger nonsense-mediated decay, leading to TPM4 repression.
Biological pathway or process:

metastasis (inhibits); migration (inhibits); invasion (inhibits); proliferation (other); PI3K/AKT (inhibits); ceRNA regulation (inhibits); other pathway/process (other)

Detected method:
Q
H
M
Validation methods:

Microarray; RNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Survival Analysis; Actinomycin D / DRB Stability Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; Western Blot; IF (Immunofluorescence); Transwell Assay; In Vivo Animal Model; H&E Staining; Bioinformatics Analysis

Clinical significance:

Down-regulated circASH2 expression indicates worse prognosis; lower circASH2 in tumors correlates with shortened overall survival and disease-free survival.

Description:

circASH2 is down-regulated in HCC and acts as a nuclear tumor-suppressive circRNA that inhibits metastasis by impairing cytoskeleton/adhesion. It binds TPM4 transcripts and promotes YBX1 LLPS to assemble a YBX1/hnRNP complex, driving splicing-coupled NMD and decay of TPM4, thereby suppressing FAK/PI3K/AKT-associated motility programs.

Confidence score:

0.8778

Other information
Title:

Cytoskeleton remodeling mediated by circRNA-YBX1 phase separation suppresses the metastasis of liver cancer.

Journal: Proceedings of the National Academy of Sciences of the United States of America
Published: 2023
PubMed ID: 37459535
Study type:

combined biological and clinical study

Data availability: GSE236039; GSE235991; GSE78520; GSE97332
Code availability: -