circRNA basic information
circBase ID: hsa_circ_0000566
Name: hsa_circ_VRK1
Synonym: circ_0000566
Host Gene: VRK1
Genomic location(hg19): chr14:97299803-97327072:+
Genomic location(hg38): chr14:96833466-96860735:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
1060198
MONDO name: ischemic stroke
Disease details: ischemic stroke / IS
Disease DO ID:
-
Disease MeSH ID:
-
Disease NCIt ID:
-
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

-

Cell lines:

HBMECs

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: ACVR2B, AGO2
Associated microRNA: miR-18a-5p
Biological function: contributes to OGD/R-induced HBMEC injury; silencing attenuates cell viability inhibition, cytotoxicity, apoptosis, and inflammation
Molecular mechanism: circ_0000566 acts as a sponge of miR-18a-5p and regulates ACVR2B expression to mediate OGD/R-induced HBMEC injury
Biological pathway or process:

apoptosis (promotes); inflammation (promotes); ceRNA regulation (other); other pathway/process (promotes)

Detected method:
Q
Validation methods:

RNase R Treatment; Actinomycin D / DRB Stability Assay; RT-qPCR; Nuclear-Cytoplasmic Fractionation; Transfection; CCK8; Annexin V/PI Flow Cytometry; Western Blot; ELISA; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Bioinformatics Analysis

Clinical significance:

potential target for the treatment of ischemic stroke

Description:

circ_0000566 is up-regulated in OGD/R-treated human brain microvascular endothelial cells and promotes OGD/R-induced endothelial cell injury. Mechanistically, circ_0000566 sponges miR-18a-5p to regulate ACVR2B expression, thereby contributing to reduced cell viability and increased apoptosis and inflammation in the in vitro ischemic stroke injury model.

Confidence score:

0.7615

Other information
Title:

Circ_0000566 contributes oxygen-glucose deprivation and reoxygenation (OGD/R)-induced human brain microvascular endothelial cell injury via regulating miR-18a-5p/ACVR2B axis.

Journal: Metabolic brain disease
Published: 2023
PubMed ID: 36781583
Study type:

biological research

Data availability: available from the corresponding author on reasonable request
Code availability: -