circRNA basic information
circBase ID: hsa_circ_0058493
Name: hsa_circ_RHBDD1
Synonym: -
Host Gene: RHBDD1
Genomic location(hg19): chr2:227729319-227732034:+
Genomic location(hg38): chr2:226864603-226867318:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissue; paired normal tissue; adjacent tissues

Cell lines:

BEL-7404; HCCLM3; SK-Hep-1; SMMC-7721; MHCC-97H; LO2

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: METTL3, YTHDC1
Associated microRNA: -
Biological function: Promotes HCC cell proliferation, migration and invasion/metastasis; promotes tumor growth in vivo; inhibits apoptosis; facilitates cell cycle progression.
Molecular mechanism: m6A-modified hsa_circ_0058493 is methylated by METTL3; YTHDC1 binds hsa_circ_0058493 and promotes its nuclear export to the cytoplasm in an m6A-dependent manner, driving HCC progression.
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); apoptosis (inhibits); cell cycle (promotes); m6A modification (promotes)

Detected method:
Q
M
Validation methods:

Bioinformatics Analysis; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; MeRIP / MeRIP-seq; RIP (RNA Immunoprecipitation); Transfection; CCK8; Colony Formation Assay; Transwell Assay; Cell Cycle Assay; Annexin V/PI Flow Cytometry; In Vivo Animal Model; H&E Staining; IHC (Immunohistochemistry); Clinical Sample Validation; Survival Analysis; Microarray

Clinical significance:

High hsa_circ_0058493 expression is associated with worse prognosis/shorter survival and may be a prognostic marker/biomarker for HCC.

Description:

hsa_circ_0058493 is up-regulated in HCC tissues and cells and acts as an oncogenic circRNA that promotes proliferation, cell-cycle progression, migration/invasion and tumor growth while inhibiting apoptosis. METTL3-mediated m6A modification enables YTHDC1 binding, which facilitates nuclear export of hsa_circ_0058493 to the cytoplasm and contributes to HCC progression; high expression predicts worse survival.

Confidence score:

0.8814

Other information
Title:

Methyltransferase-Like 3-Mediated m6A Methylation of Hsa_circ_0058493 Accelerates Hepatocellular Carcinoma Progression by Binding to YTH Domain-Containing Protein 1.

Journal: Frontiers in cell and developmental biology
Published: 2021
PubMed ID: 34888309
Study type:

combined biological and clinical study

Data availability: GSE97332; GSE97508
Code availability: -