circRNA basic information
circBase ID: hsa_circ_0010039
Name: hsa_circ_CASP9
Synonym: circCASP9
Host Gene: CASP9
Genomic location(hg19): chr1:15844604-15844890:-
Genomic location(hg38): chr1:15518109-15518395:-
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissue; paracancerous tissues; adjacent normal tissues

Cell lines:

AGS; MGC-803; MKN-45; GES-1; HEK293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: KANK1
Associated microRNA: miR-589-5p
Biological function: inhibits proliferation, migration, invasion, tumor growth, and metastasis in gastric cancer
Molecular mechanism: ceRNA sponge of miR-589-5p to upregulate KANK1
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); metastasis (inhibits); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; divergent primers PCR; Sanger Sequencing; FISH / smFISH; Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Colony Formation Assay; Transwell Assay; Western Blot; Clinical Sample Validation; In Vivo Animal Model

Clinical significance:

might be a novel promising biomarker in GC cells

Description:

circCASP9 is down-regulated in gastric cancer tissues and cell lines and functions as a tumor suppressor. It sponges miR-589-5p to upregulate KANK1, thereby inhibiting proliferation, migration/invasion, tumor growth, and liver metastasis.

Confidence score:

0.774

Other information
Title:

Identification and Characterization of the Roles of circCASP9 in Gastric Cancer Based on a circRNA-miRNA-mRNA Regulatory Network.

Journal: Oxidative medicine and cellular longevity
Published: 2022
PubMed ID: 35320976
Study type:

combined biological and clinical study

Data availability: The data used to support the findings of this study are included within the article.
Code availability: -