circRNA basic information
circBase ID: hsa_circ_0006508
Name: hsa_circ_VMP1
Synonym: circ_0006508 / circ_6508
Host Gene: VMP1
Genomic location(hg19): chr17:57808781-57816308:+
Genomic location(hg38): chr17:59731420-59738947:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues; paired adjacent samples

Cell lines:

HCT-116; HT-29

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: HIF-1alpha
Associated microRNA: miR-1272
Biological function: promotes CRC cell viability/proliferation, colony formation, and glycolysis (Warburg effect) under hypoxia
Molecular mechanism: HIF-1alpha binds circ_0006508 promoters to enhance its transcription under hypoxia; circ_0006508 acts as a ceRNA to sponge miR-1272, relieving miR-1272 suppressive effects on glycolysis
Biological pathway or process:

glycolysis (promotes); proliferation (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; Nuclear-Cytoplasmic Fractionation; Luciferase Reporter Assay; ChIP / ChIP-seq; Transfection; CCK8; Colony Formation Assay; Flow Cytometry(Non-apoptosis/cycle); Survival Analysis; Bioinformatics Analysis

Clinical significance:

Higher circ_0006508 expression is associated with advanced TNM stage and predicts worse overall survival in CRC patients.

Description:

In CRC, circ_0006508 is up-regulated and induced by hypoxia via HIF-1alpha-driven transcription. It mainly localizes to the cytoplasm and promotes proliferation/colony formation and the Warburg effect by sponging miR-1272. High circ_0006508 expression correlates with advanced TNM stage and poorer overall survival.

Confidence score:

0.725

Other information
Title:

Hypoxia-induced Circular RNA hsa_circ_0006508 Promotes the Warburg Effect in Colorectal Cancer Cells.

Journal: Balkan medical journal
Published: 2023
PubMed ID: 36397308
Study type:

combined biological and clinical study

Data availability: available from the corresponding author upon reasonable request
Code availability: -