circRNA basic information
circBase ID: hsa_circ_0001417
Name: hsa_circ_ANKRD17
Synonym: -
Host Gene: ANKRD17
Genomic location(hg19): chr4:73950965-73958017:-
Genomic location(hg38): chr4:73085248-73092300:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0021042
MONDO name: glioma
Disease details: glioma
Disease DO ID:
-
Disease MeSH ID:
D005910
Disease NCIt ID:
C3059
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

-

Cell lines:

hCMEC/D3; U87; HEK293T; NHAs

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: PTBP1, ETV1, Ago2
Associated microRNA: miR-195-5p
Biological function: Increases BTB tight junction-related proteins and decreases BTB permeability; its knockdown increases BTB permeability and enhances doxorubicin transport, promoting glioma cell apoptosis in the in vitro BTB model.
Molecular mechanism: PTBP1 promotes circRNA_001160 biogenesis; circRNA_001160 acts as a miR-195-5p sponge in RISC, relieving miR-195-5p repression of ETV1; ETV1 transcriptionally activates tight junction-related proteins (ZO-1, occludin, claudin-5) to reduce BTB permeability.
Biological pathway or process:

ceRNA regulation (promotes); apoptosis (other)

Detected method:
Q
B
H
M
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; RT-qPCR; Northern Blot; FISH / smFISH; Microarray; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; Western Blot

Clinical significance:

-

Description:

circRNA_001160 (from ANKRD17) is up-regulated in glioma endothelial cells and decreases BTB permeability by maintaining tight-junction protein expression. Mechanistically, PTBP1 promotes its biogenesis, and circRNA_001160 sponges miR-195-5p to relieve repression of ETV1, which transcriptionally activates ZO-1/occludin/claudin-5. Targeting circRNA_001160 (e.g., knockdown) increases BTB permeability and can enhance doxorubicin passage in the in vitro BTB model.

Confidence score:

0.7531

Other information
Title:

Biosynthetic CircRNA_001160 induced by PTBP1 regulates the permeability of BTB via the CircRNA_001160/miR-195-5p/ETV1 axis.

Journal: Cell death & disease
Published: 2019
PubMed ID: 31862871
Study type:

biological research

Data availability: Supplementary Information accompanies this paper at (10.1038/s41419-019-2191-z).
Code availability: -